Pairwise Alignments

Query, 1153 a.a., ATP-dependent nuclease subunit A from Caulobacter crescentus NA1000 Δfur

Subject, 1224 a.a., Chi activated ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease from Pseudomonas putida KT2440

 Score =  108 bits (270), Expect = 3e-27
 Identities = 226/904 (25%), Positives = 355/904 (39%), Gaps = 131/904 (14%)

Query: 14  SAFVTANAGSGKTKTLIDRVARLLLA-----GVE----PQAILCVTYTKAAAAEMQRRLF 64
           S  + A+AG+GKT T+     RL+L      G E    P  IL VT+T AA  E++ R+ 
Sbjct: 16  SQLIEASAGTGKTFTISALYLRLILGHGGEQGFERELLPPQILVVTFTDAATKELRERIR 75

Query: 65  DRLGKWSVTSDADLRAELVKLVGEADARYDAKSLSDARALFAKALETPGGLKIQTIHAFC 124
            RL + +     +L      L+ +    Y  ++          A++      + TIH +C
Sbjct: 76  ARLAEAARFFRGELEGA-DPLLHQLRDDYPQENWPRCAGRLEIAVQWMDEAAVSTIHGWC 134

Query: 125 EKLLRRFPLEAGVSPGFTVMDDQA---GAAIARAARRA-------VAAWVDSHDDAFSEA 174
           +++LR    ++G     T+  D +   G  +    RR          AWV  +  +    
Sbjct: 135 QRMLREHAFDSGSLFTQTLETDHSELLGQVMRDYWRRFCYGMQGDALAWVRGNWGSPDAL 194

Query: 175 YARFSVALDFQSFEAMFAGFEARRGQIMTYVQRCGGLAGAVSDAWRRCGFDGPTSAEDLA 234
             R      F    A   G E     I   +Q+ G     +   W +        AE+L 
Sbjct: 195 LPRIRPL--FGRVRAQQNGPEPA-ALIQASLQQRGAQLARIKAPWAQW-------AEEL- 243

Query: 235 TRAMARLDLPAWRAVASVLFDGGGKQDAKSAEA----LAAVARDPDATLDLALRALFTEG 290
            R + R  L A +         G K  A+  E     L A A D +  ++L L   FT  
Sbjct: 244 -RQICRDALAAKQV-------DGRKMQARYFEPWFDKLCAWASD-EQLVELDLGTGFTRL 294

Query: 291 GEGTPATWPAKTSGLKSREDLREALLLEQAKLEAAREQVRAARVAEDTQNALLL---AGL 347
              TPA       G         A+   Q +L+A            D+ +A LL   A  
Sbjct: 295 ---TPAGMAEAWKGEPPEHPALNAMQHLQQQLQAL-----------DSPDAPLLEHAASW 340

Query: 348 YIERHMAEKEARGALDFTDLIDKTR-LLLTEKVEAAWVLYKLDGGIDHILLDEAQDTAPE 406
              R   EK  R  + F D++ + +  L +E  E    L +    +   L+DE QDT P 
Sbjct: 341 VSARFEVEKRRRAEMGFDDMLVRLQHALASEAGERLASLIREQFPV--ALIDEFQDTDPV 398

Query: 407 QWEILRALTADFFVGETSEGWSGRRAERTLFVVGDEKQSIYSFQGADPTRLLEETQGYIS 466
           Q+ I   +       + SE     RAE  LF++GD KQ+IY+F+GAD    L   +    
Sbjct: 399 QYGIFERIY------QISEN----RAETGLFMIGDPKQAIYAFRGADIYTYLAARRATSG 448

Query: 467 RIEAVGAVGKGVPLTVSYRSTHEVLSFVDALFSDPDTREGVPPPVGQDLVRHELFRHGHP 526
           R+ +         L  +YRS+  +++ V+ +F   + RE      G+      LFR    
Sbjct: 449 RLHS---------LDTNYRSSKAMVAAVNQVFLQAEARE-----AGRGAF---LFREADD 491

Query: 527 GCVDLWPLTRELPGED----------REAWEKPLDEEGERSANR-RLAEAIAAETRAILD 575
             +    +  +  GE            + W+   +E    S  R ++A + A+   A+L+
Sbjct: 492 NPLPFIEVRAKGRGEQLLIDGEVSAALQCWQLESEEPVSSSVYRQQMAASCASHIVALLN 551

Query: 576 ---RGDAVFDKDLGRHRAAHAGDILVLVR--RRKALFEEIIRALKRRGVPVAGADRLALS 630
              +G + F    G  RA    DI +LVR      +    + A + R V ++  D +  +
Sbjct: 552 GGQQGTSGFRNAEGELRACLPSDIAILVRDGHEAQMVRAELAAREVRSVYLSDKDSVFAA 611

Query: 631 SHIAFEDLVALGRFILFPDDDLTLAALLKTPFCGLGDDDVYALAKGRRGTLWVELTRRSE 690
                 DL+A  +    PD +  L A L +   GL    +  L +  R  +W     R  
Sbjct: 612 QEA--HDLLAWLKACAEPDSERLLKAALASLTLGLSLAALDRLNQDER--VWESWVMRFR 667

Query: 691 ERPEWAAARAVLDWALAEGRRRQPFEFYAGWLGLTDADGRSHRAKVLTRLGAEAEEALDE 750
              +    + VL        R    +F      +  +DG     +VLT L   AE  L +
Sbjct: 668 LYRDTWQRQGVLPML-----RHLLHDFQLPRTLIRRSDGE----RVLTNLLHLAE--LLQ 716

Query: 751 FLAQVMEAEQRGVRDLEALVADFAALDIIVKREMEGARREVRVMTAHGSKGLEAPIVFLP 810
             A  ++ EQ  +R L   +A            +E   + V+V+T H SKGLE P+V+LP
Sbjct: 717 QAAGELDGEQALIRHLAEHLASSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVYLP 776

Query: 811 ETTVKRGAGGSPLLVTEDGALLWCAS-GKNDCAVSAKARKLR--EDKESQEALRLLYVAL 867
                +   GS L       L W  S G     ++    ++   +D+   E LRLLYVAL
Sbjct: 777 FICTSKPVDGSRL------PLAWHDSEGNAHLTLTPDQEQIERADDERLAEDLRLLYVAL 830

Query: 868 TRAR 871
           TRA+
Sbjct: 831 TRAQ 834