Pairwise Alignments

Query, 1153 a.a., ATP-dependent nuclease subunit A from Caulobacter crescentus NA1000 Δfur

Subject, 1117 a.a., ATP-dependent DNA helicase pcrA (EC 3.6.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  216 bits (549), Expect = 1e-59
 Identities = 334/1205 (27%), Positives = 485/1205 (40%), Gaps = 197/1205 (16%)

Query: 7    IAADPTISAFVTANAGSGKTKTLIDRVARLLLAGVEPQAILCVTYTKAAAAEMQRRLFDR 66
            +A DP  S  V A AG+GKT  L+ R+ R LL G  PQ IL +T+TK AA EM+ RL   
Sbjct: 21   LACDPARSIAVEACAGAGKTWMLVSRILRALLDGCAPQDILAITFTKKAAGEMRDRLNAE 80

Query: 67   LGKWSVTSDADLRAEL-VKLVGEADARYDAKSLSDARALFAKALETPGGLKIQTIHAFCE 125
            L +W+  SD  L  EL V+ +GEADAR   + + +AR+L+ +       ++++T H++  
Sbjct: 81   LRRWAGLSDDALAIELRVRGLGEADAR---RRVPEARSLYERVTAIGRPVQVRTFHSWFA 137

Query: 126  KLLRRFPL----EAGVSPGFTVMDDQAGAAIARAARRAVAAWVDSHDDA--FSEAYARFS 179
             LLR  PL    E  +   + +++D A  A+A+   R  AA   +  +   F ++ A   
Sbjct: 138  ALLRGAPLSVLQELQLPVQYELLEDDA-RAVAQVWPRFYAALATNPAERQDFMDSVAEHG 196

Query: 180  VALDFQSFEAMFAGFEARRGQIMTYVQRCGGLAGAVSDAWRR-----CGFDGPTS--AED 232
                 ++ E      +A + ++   +    G+  A  D   +      GFD P     +D
Sbjct: 197  RHQTLKALE------KALQKRVEFALADAAGVVDASVDPVDQRYPEYAGFDDPVRWLVQD 250

Query: 233  LATRAMARLDLPAWRAVASVLFDGGGKQDAKSAEALAAVARDPDATLDLALRALFTEGGE 292
                 + R    A    ++V F       AK  E   A+ +   A +   L AL T+  E
Sbjct: 251  ARALTLLREAAQALGRASAVTF------SAKGVELEQALGQADGAGV---LTALLTQKDE 301

Query: 293  GTPATWPAKTSGLKSREDLREALLLEQAKLEAAREQVRAARVAEDTQNALLLAGLYIERH 352
                 +  K +G+   E +R A  L    LEA R+     R     Q    LA + +   
Sbjct: 302  A--RKFSDKLAGI---EAVRAAQELALRTLEALRQH----RAWLHHQRLSRLARVLLTCF 352

Query: 353  MAEKEARGALDFTDLIDKTRLLLTEKVEAAWVLYKLDGGIDHILLDEAQDTAPEQWEILR 412
             A K  RG +D  D+    R LL +   + W+  +LD  + H+L+DE QDT P QW+ L 
Sbjct: 353  AAFKRERGWVDMNDVEGAARRLLGDAELSGWLQQRLDARVRHVLIDEFQDTNPLQWQALY 412

Query: 413  ALTADFFVGETSEGWSGRRAERTLFVVGDEKQSIYSFQGADPTRLLEETQGYISRIEAVG 472
               + +         +G      +F+VGD KQSIY F+ A+P ++ +  Q ++ +    G
Sbjct: 413  GWLSAY-------AGAGPGEAPCVFLVGDPKQSIYRFRRAEP-QVFKAAQAFVVQ----G 460

Query: 473  AVGKGVPLTVSYRSTHEVLSFVDALFSDPDTREGVPPPVGQDLVRH--ELFRHGHPGCVD 530
              G  +    + R    V+  ++A       + G     G D   H  E   HG   C+ 
Sbjct: 461  LAGALLSCDHTRRCAPAVVDALNAAMG-AAVQAG---EYGSDYRTHTTESTAHGEVLCLP 516

Query: 531  LWP---LTRELPGE-DREAWEKPLDEEGERSANRRLA-EAIAAETRAILDRGDAVFDKDL 585
              P   L R   G+ D   W   L        +   A EA  A      + GD     D 
Sbjct: 517  QLPRSLLERSAAGQGDGPVWRDSLITPRVLPEDSLAALEAAQAADWIATEVGDGRLLPD- 575

Query: 586  GRHRAAHAGDILVLVRRRKALFEEIIRALKRRGVPVAGADRLALSSHIAFEDLVALGRFI 645
                     DI+VL RRR+ L   +  AL  RG+     ++L L    A +D+VAL   +
Sbjct: 576  ---------DIMVLSRRRERL-AWMHEALLERGLASEQPEKLELGEAPAVQDVVALLDAL 625

Query: 646  LFPDDDLTLAALLKTPFCGLGDDDVYALAKGR----------------RGTLWVELTR-R 688
            +    DL+LA  LK+P CG  DDD+  LA+ R                R + W  L R  
Sbjct: 626  VSTRHDLSLARALKSPLCGWSDDDLAQLARWRVRWTAPRTEGADQPRIRLSWWDVLQRFA 685

Query: 689  SEERPEWAAARAVLDWALAEGRRRQPFEFYAGWL--------------------GLTDAD 728
                 E AAA A    A       Q    Y GWL                        A 
Sbjct: 686  GLSADEQAAASATPAQASLMLGTAQRLALYRGWLLSLPPHDALSALYDHGDVLARFAQAV 745

Query: 729  GRSHRAKVLTRLGAEAEEALDEFLAQVMEAEQRGVRDLEALVADFAALDIIVKREMEGAR 788
              S RA VL    A+  + L + LAQ         R + AL A       +   +  GA 
Sbjct: 746  PASQRAAVL----AQLRDLLTQSLAQDGGRFLTPYRFVRALKAGGIKATAV---QTPGA- 797

Query: 789  REVRVMTAHGSKGLEAPIVFLPETTVKRGAGGSPLLVTE-------DGALLWCASGKNDC 841
              VR++T HG+KGLEA  V + +T        S  ++ E           ++ AS K+  
Sbjct: 798  --VRLLTIHGAKGLEAHTVLMLDTDSGSARPESMGVLVEWPGEDPLPRRFVFLASEKSPP 855

Query: 842  AVSAKARKLREDKESQEALRLLYVALTRARERLILCGRIDARTKDDKVGGWYAAARAAFA 901
            A +  A +  +   S E L  LYVALTRA  RL++               WYA  +   A
Sbjct: 856  ACAVDALQQEQQARSLEELNALYVALTRAESRLVIS---SFEPHKRSATTWYARLQ-PLA 911

Query: 902  HPDIAPGVRTIGDGETAFLRYGPDPLGAPRVAPATAAVAAPPAWIMAQATPEPAAARYAA 961
             P  AP      DGE   L   P     P +   T A++             PA     A
Sbjct: 912  SPLEAPSPAVGLDGER--LLENP-TFDLPSLPALTVALS-------------PAVDAEKA 955

Query: 962  PSRLEDTARVPAPSPLARIAGLGRYRRGELIHKLLQLLPDLPPAQRPDAA---RRILAAE 1018
            P  ++DTA                 R G  +H+LL+  P   PAQ  D A    + +A E
Sbjct: 956  PPPVDDTAN----------------RIGLALHRLLEWRP--TPAQGFDWAPEHSQAVARE 997

Query: 1019 RDLTDTQRTEMASAAFEVLE-------DARFAAVFGPNSRAEVALAGTSAHLPQGLAVSG 1071
              L  TQ  ++ + A  ++        DA     +G     EVAL      L        
Sbjct: 998  FALDPTQARDVLAMARRIVSGEAAWAWDAEQLNHWG----NEVALFHRGELL-------- 1045

Query: 1072 RVDRLV--VDDARVLVVDYKTNRPSPDRIEDADTAYLAQMAVYVAVLREVFPGRTVEAAL 1129
            R+DRLV   D     V+DYK +   P+R        LAQM  Y   + +  PG TV  A 
Sbjct: 1046 RLDRLVRRRDSGDWWVLDYK-SAAHPER----QPELLAQMEGYRQAMAQARPGETVRLAF 1100

Query: 1130 VWTDG 1134
            +   G
Sbjct: 1101 INAQG 1105