Pairwise Alignments

Query, 1153 a.a., ATP-dependent nuclease subunit A from Caulobacter crescentus NA1000 Δfur

Subject, 1181 a.a., Exodeoxyribonuclease V beta chain (EC 3.1.11.5) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 85.5 bits (210), Expect = 2e-20
 Identities = 135/552 (24%), Positives = 220/552 (39%), Gaps = 80/552 (14%)

Query: 355 EKEARGALDFTDLIDKTRLLL-TEKVEAAWVLYKLDGGIDHILLDEAQDTAPEQWEILRA 413
           EK  RG L F D++ +    L +E  EA     +    +   ++DE QDT P+Q+ I R 
Sbjct: 342 EKRRRGELGFDDMLSRLDTALRSESGEALAAAIRTRFPV--AMIDEFQDTDPQQYRIFRR 399

Query: 414 LTADFFVGETSEGWSGRRAERTLFVVGDEKQSIYSFQGADPTRLLEETQGYISRIEAVGA 473
           +            W   + +  L ++GD KQ+IY+F+GAD            + ++A   
Sbjct: 400 I------------WR-HQPDTALLLIGDPKQAIYAFRGAD----------IFTYMKARSE 436

Query: 474 VGKGVPLTVSYRSTHEVLSFVDALFS---DPDTREGVPPPVGQDLVRHELFRHGHPGCVD 530
           V     L  ++RS   +++ V+ LFS   D      +P    +   R++  +        
Sbjct: 437 VSAHYTLDTNWRSAPGMVNSVNKLFSQMNDAFMFRDIPFSPVKFAPRNQSLQFK------ 490

Query: 531 LWPLTRELPGEDREAWEKPLDEEGERSANRRLAEAIAAETRAIL---DRGDAVFDKDLGR 587
                 + P      W    +  G       +A+  A + R  L     GDA+       
Sbjct: 491 ----VNDAPQPAMTLWLMEGESCGSGDYQSYMAQVCATQIRDWLRAGQTGDALLTNG-DS 545

Query: 588 HRAAHAGDILVLVRRRK--ALFEEIIRALKRRGVPVAGADRLALSSHIAFEDLVALGRFI 645
            R   A DI VLVR R+  AL  + +  L    V ++  D  ++   +  ++++ + + +
Sbjct: 546 SRPVRASDISVLVRSRREAALIRDALTLLAIPSVYLSNRD--SVFETLEAQEMLWVLQAV 603

Query: 646 LFPDDDLTLAALLKTPFCGLGDDDVYALAKGRRGTLWVELTRRSEERPEWAAARAVLDWA 705
           + P+ + TL + L T   GL   D+  L        W  +    +   +    R V+   
Sbjct: 604 MAPERENTLRSALATSMMGLTALDIETLNNDENA--WDAVVEEFDGYRQIWHKRGVMPML 661

Query: 706 LAEGRRRQPFEFYAGWLG----LTDADGRSHRAKVLTRLGA--EAEEALDEFLAQ-VMEA 758
            A    R   E      G    LTD     H +++L   G+  E+E AL  +LAQ ++E 
Sbjct: 662 RALMSARNIAENLLATAGGERRLTDI---LHISELLQEAGSQLESEHALVRWLAQHILEP 718

Query: 759 EQRGVRDLEALVADFAALDIIVKREMEGARREVRVMTAHGSKGLEAPIVFLPETTVKRGA 818
           +                     +  +E  +  V+++T H SKGLE P+V+LP  T  R  
Sbjct: 719 DSNASSQ---------------QLRLESDKHLVQIVTIHKSKGLEYPLVWLPFITHFRVQ 763

Query: 819 GGSPLLVTEDGALLWCASGKNDCAVSAKARKLREDKESQEALRLLYVALTRARERLILCG 878
             +          +   S   +    A+A +L ED      LRLLYVALTRA     L  
Sbjct: 764 DQAFYHDRHSYEAVLDLSHAEESIALAEAERLAED------LRLLYVALTRAVWHCSLGV 817

Query: 879 RIDARTKDDKVG 890
               R + DK G
Sbjct: 818 APLVRRRSDKKG 829



 Score = 41.6 bits (96), Expect = 4e-07
 Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 25/160 (15%)

Query: 3   DPQRIAADPTISAFVTANAGSGKTKTLIDRVARLLLA---------GVEPQAILCVTYTK 53
           DP R+    T    + A+AG+GKT T+     RLLL           +  + +L VT+T+
Sbjct: 9   DPLRLPL--TGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTE 66

Query: 54  AAAAEMQRRLFDRLGKWSV-----TSDADLRAELVKLVGEADARYDAKSLSDARALFAKA 108
           AA  E++ R+   + +  +     ++D  L A L++ +       D K  +    L  + 
Sbjct: 67  AATEELRGRIRSNIHELRIACLRESTDNPLYARLLEEIS------DKKQAAQWLLLAERQ 120

Query: 109 LETPGGLKIQTIHAFCEKLLRRFPLEAGVSPGFTVMDDQA 148
           ++      + TIH FC+++L     E+G+     +++D++
Sbjct: 121 MDEAA---VFTIHGFCQRMLSLNAFESGMLFEQQLIEDES 157