Pairwise Alignments

Query, 1153 a.a., ATP-dependent nuclease subunit A from Caulobacter crescentus NA1000 Δfur

Subject, 1180 a.a., exonuclease V (RecBCD complex), beta subunit from Escherichia coli BL21

 Score = 95.1 bits (235), Expect = 3e-23
 Identities = 214/925 (23%), Positives = 364/925 (39%), Gaps = 167/925 (18%)

Query: 17  VTANAGSGKTKTLIDRVARLLLA---------GVEPQAILCVTYTKAAAAEMQRRLFDRL 67
           + A+AG+GKT T+     RLLL           +  + +L VT+T+AA AE++ R+   +
Sbjct: 21  IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80

Query: 68  GKWSV-----TSDADLRAELVKLVGEADARYDAKSLSDARALFAKALETPGGLKIQTIHA 122
            +  +     T+D  L   L++ +       D K+ +    L A+         + TIH 
Sbjct: 81  HELRIACLRETTDNPLYERLLEEI-------DDKAQAAQWLLLAERQMDEAA--VFTIHG 131

Query: 123 FCEKLLRRFPLEAGVSPGFTVMDDQAGAAIARAARRAVAAWVDSHDDAFSEAYARFSVAL 182
           FC+++L     E+G+     +++D++                     A ++ + R    L
Sbjct: 132 FCQRMLNLNAFESGMLFEQQLIEDESLLRY----------------QACADFWRRHCYPL 175

Query: 183 DFQSFEAMFAGFEARRGQIMTYVQRCGGLAGAVSDAWRRCGFDGPTSAEDLATR---AMA 239
             +  + +F  ++  +  +    +   G A  +           P   E LA+R    +A
Sbjct: 176 PREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAP--------PPDDETLASRHAQIVA 227

Query: 240 RLDL--PAWRAVAS---VLFDGGG--------KQDAKSAEALAAVARDPDATLDL--ALR 284
           R+D     WR        L +  G           AK  + ++A A +   +  L  +L 
Sbjct: 228 RIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLE 287

Query: 285 ALFTEGGEGTPATWPAKTSGLKSREDLREALLLEQAKLEAAREQVRAARVAEDTQNALLL 344
                  E        K  G   R  L EA+    A+  + R+ V    +AE  +     
Sbjct: 288 KFSQRFLEDR-----TKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVA-- 340

Query: 345 AGLYIERHMAEKEARGALDFTDLIDKTRLLLTEKVEAAWVLYK-LDGGIDHILLDEAQDT 403
                     EK  RG L F D++  +RL    + E+  VL   +       ++DE QDT
Sbjct: 341 ---------REKRRRGELGFDDML--SRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDT 389

Query: 404 APEQWEILRALTADFFVGETSEGWSGRRAERTLFVVGDEKQSIYSFQGADPTRLLEETQG 463
            P+Q+ I R +            W   + E  L ++GD KQ+IY+F+GAD          
Sbjct: 390 DPQQYRIFRRI------------WH-HQPETALLLIGDPKQAIYAFRGAD---------- 426

Query: 464 YISRIEAVGAVGKGVPLTVSYRSTHEVLSFVDALFSDPDT----REGVPPPV---GQDLV 516
             + ++A   V     L  ++RS   +++ V+ LFS  D     RE    PV   G++  
Sbjct: 427 IFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA 486

Query: 517 RHELFRHGHPGCVDLWPLTRELPGEDREAWEKPLDEEGERSANRRLAEAIAAETRAILD- 575
              +F+      + +W +  E  G             G+  +   +A+  AA+ R  L  
Sbjct: 487 LRFVFKGETQPAMKMWLMEGESCGV------------GDYQST--MAQVCAAQIRDWLQA 532

Query: 576 --RGDAVFDKDLGRHRAAHAGDILVLVRRRKALFEEIIRALKRRGVP-VAGADRLALSSH 632
             RG+A+        R   A DI VLVR R+    ++  AL    +P V  ++R ++   
Sbjct: 533 GQRGEALLMNG-DDARPVRASDISVLVRSRQEA-AQVRDALTLLEIPSVYLSNRDSVFET 590

Query: 633 IAFEDLVALGRFILFPDDDLTLAALLKTPFCGLGDDDVYALAKGRRGTLWVELTRRSEER 692
           +  ++++ L + ++ P+ + TL + L T   GL   D+  L        W  +    +  
Sbjct: 591 LEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHA--WDVVVEEFDGY 648

Query: 693 PEWAAARAVLDWALAEGRRRQPFEFYAGWLG----LTDADGRSHRAKVLTRLGA--EAEE 746
            +    R V+    A    R   E      G    LTD     H +++L   G   E+E 
Sbjct: 649 RQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDI---LHISELLQEAGTQLESEH 705

Query: 747 ALDEFLAQ-VMEAEQRGVRDLEALVADFAALDIIVKREMEGARREVRVMTAHGSKGLEAP 805
           AL  +L+Q ++E +                     +  +E  +  V+++T H SKGLE P
Sbjct: 706 ALVRWLSQHILEPDSNASSQ---------------QMRLESDKHLVQIVTIHKSKGLEYP 750

Query: 806 IVFLPETTVKRGAGGSPLLVTEDGALLWCASGKNDCAVSAKARKLREDKESQEALRLLYV 865
           +V+LP  T  R    +          +   +   +    A+A +L ED      LRLLYV
Sbjct: 751 LVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAED------LRLLYV 804

Query: 866 ALTRARERLILCGRIDARTKDDKVG 890
           ALTR+     L      R + DK G
Sbjct: 805 ALTRSVWHCSLGVAPLVRRRGDKKG 829