Pairwise Alignments

Query, 1153 a.a., ATP-dependent nuclease subunit A from Caulobacter crescentus NA1000 Δfur

Subject, 1185 a.a., ATP-dependant DNA helicase from Agrobacterium fabrum C58

 Score =  659 bits (1700), Expect = 0.0
 Identities = 458/1183 (38%), Positives = 635/1183 (53%), Gaps = 61/1183 (5%)

Query: 5    QRIAADPTISAFVTANAGSGKTKTLIDRVARLLLAGVEPQAILCVTYTKAAAAEMQRRLF 64
            QR+A+DP  SA+V+ANAGSGKT  L  RV RLLLAG  P AILC+TYTKAAA+EM  R+F
Sbjct: 26   QRLASDPASSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAASEMSSRVF 85

Query: 65   DRLGKWSVTSDADLRAELVKLVGEADARYDAKSLSDARALFAKALETPGGLKIQTIHAFC 124
            DRL +W+   D+DL+  +  + G+   R     L++AR LFAKALETPGGLKIQTIHAFC
Sbjct: 86   DRLAEWATLPDSDLKDRITTIEGKVPDRI---KLAEARRLFAKALETPGGLKIQTIHAFC 142

Query: 125  EKLLRRFPLEAGVSPGFTVMDDQAGAAIARAARRAVAAWVDSHDDA-FSEAYARFSVALD 183
            E LL +FPLEA V+  F+V+DD+A   +   ARR++   V + DDA   +A A      D
Sbjct: 143  EALLHQFPLEANVAGHFSVLDDRAATTLLAEARRSLLTAVSTEDDAELVQALAYVLDLAD 202

Query: 184  FQSFEAMFAGFEARRGQIMTYV---QRCGGLAGAVSDAWR-RCGFDGPTSAEDL-ATRAM 238
                EA+ +   A R  + +++   ++ GGL   +    +   G    T+AE       +
Sbjct: 203  ESGLEALLSAIIANRSALRSFLHEAKQSGGLDVRLRQEMQIAAGETEETAAEAFWPLPGL 262

Query: 239  ARLDLPAWRAVASVLFDGGGKQDAKSAEALAAVARDPDAT--LDLALRALFTEGGEGTPA 296
            + L L  +  +A  +   GG +  + A AL    R PD    ++L   AL T  GE    
Sbjct: 263  SGLVLDTYLTLADEV---GGSRVIEVAYALREAKRQPDPVRRMELIEAALLTAKGEKKSD 319

Query: 297  TWPAKTSGLKSREDLREALLLEQAKLEAAREQVRAARVAEDTQNALLLAGLYIERHMAEK 356
             +       KS  DL +AL L +  + A R + R  R+   T++AL+LA   I      K
Sbjct: 320  AYVINKGMQKSAPDLVDALTLARDHVVACRNRYRLVRMLVATKSALVLAERLIGDFEDLK 379

Query: 357  EARGALDFTDLIDKTRLLLTEKVEAAWVLYKLDGGIDHILLDEAQDTAPEQWEILRALTA 416
            + R  LDF DLI++   LL      AWV YKLD GIDHIL+DEAQDT+P QW I+++L A
Sbjct: 380  KQRSQLDFEDLIERAANLLNRDTAGAWVHYKLDQGIDHILVDEAQDTSPVQWSIIQSLAA 439

Query: 417  DFFVGETSEGWSGRRAERTLFVVGDEKQSIYSFQGADPTRLLEETQGYISRIEAVGAVGK 476
            DFF GE     S R   RTLF VGDEKQSIYSFQGA P R  +E      R++ V     
Sbjct: 440  DFFNGE-----SARMGRRTLFAVGDEKQSIYSFQGARPERFSQERDETKRRVDQVEQAFH 494

Query: 477  GVPLTVSYRSTHEVLSFVDALFSDPDTREGVPPPVGQDLVRHELFRHGHPGCVDLWPLTR 536
             + L +S+RST +VL+ VD +FSDP    G+      + V H   R GHPG V++W +  
Sbjct: 495  RIRLPLSFRSTEDVLAAVDQVFSDPKNASGL--SADNEPVEHRSNRAGHPGTVEVWDMVA 552

Query: 537  ELPGEDREAWEKPLDEEGERSANRRLAEAIAAETRAILDRGDAVFDKDLGRHRAAHAGDI 596
                ED E W  P D   E +    +A  IAA    ++     +   + G  RA   GDI
Sbjct: 553  PETTEDEEDWTAPFDALRESAPATIVARRIAARIADMIGNQTII---EKGVERAVEPGDI 609

Query: 597  LVLVRRRKALFEEIIRALKRR-GVPVAGADRLALSSHIAFEDLVALGRFILFPDDDLTLA 655
            LVLVR+R A    + R LKRR  +PVAGADRL L+ HIA +DL+ALGRF++ P+DDL+LA
Sbjct: 610  LVLVRKRAAFVNALTRELKRRKNIPVAGADRLRLTDHIAVQDLLALGRFVVLPEDDLSLA 669

Query: 656  ALLKTPFCGLGDDDVYALA--KGRRGTLWVELTRRS-EERPEWAAARAVLDWALAEGRRR 712
            ALLK+P   L +DDV+ +A  +    ++W  L   S EE    +     L   ++  +  
Sbjct: 670  ALLKSPLFNLTEDDVFEIAATRSEAESVWQRLQVLSGEETSRLSIVTDKLRHFISLSKTA 729

Query: 713  QPFEFYAGWLGLTDADGRSHRAKVLTRLGAEAEEALDEFLAQVMEAEQRGVRDLEALVAD 772
               +F+A  L L D      R K L RLG EA + LDEFL+  ++ E+ G+  L+A ++ 
Sbjct: 730  TVHDFFAAVLTLHDG-----RKKFLGRLGNEASDVLDEFLSFALDHERTGLPGLQAFLSV 784

Query: 773  FAALDIIVKREMEGARREVRVMTAHGSKGLEAPIVFLPETTVKR-GAGGSPLL--VTEDG 829
                   VKRE +  R EVR+MT H SKGLEAP+VF+ +   K       P L  V  DG
Sbjct: 785  LETDSPEVKREQDKDRGEVRIMTVHASKGLEAPVVFVVDGGSKAFNHSHVPKLRFVEGDG 844

Query: 830  AL--LWC-ASGKNDCAVSAKARKLREDKESQEALRLLYVALTRARERLILCGRIDARTKD 886
                +W   SG ++  + +   +L+   E  E  RLLYVA+TRA + L++CG    R + 
Sbjct: 845  DAFPVWLPGSGFSNHLIRSDEERLKTAAE-DEYRRLLYVAMTRAADHLVVCG---YRGQK 900

Query: 887  DKVGGWYAAARAAFA-HPDIAPGVRTIGDGE----TAFLRYGPDPLGAPR--VAPATAAV 939
            +    W+A  +AA A + D         DGE      + +    P  AP     P     
Sbjct: 901  ENPECWHAIVKAALAENQDHCQPQAFSADGEEWQGLVWRKSEARPALAPHKPAEPQQEED 960

Query: 940  AAPPAWIMAQATPEPAAARYAAPSR----LEDTA-----RVPAPSPLARIAGLGRYRRGE 990
               P  ++A     P+  R  +PS     ++D A     R P        + L   +RG+
Sbjct: 961  HTLPPGLLAPLPALPSLPRPLSPSGAGTIIDDGADDLAVRSPLFGEKTEASSLA-LQRGK 1019

Query: 991  LIHKLLQLLPDLPPAQRPDAARRIL-AAERDLTDTQRTEMASAAFEVLEDARFAAVFGPN 1049
            L+H++LQ LPD   ++R +AARR    A R    T R  +  A   VL +      F  N
Sbjct: 1020 LVHRMLQALPDFAESEREEAARRYAERAARFWPATDRERLIQAVLRVLSEPAVQPAFSAN 1079

Query: 1050 SRAEVALAGTSAHLPQGLAVSGRVDRLVVDDARVLVVDYKTNRPSPDRIEDADTAYLAQM 1109
            SRAEV++ GT     Q  AVSGR+DRL V+  RV++VDYKTNR  P    +   +++AQ+
Sbjct: 1080 SRAEVSIMGTMTLGRQHYAVSGRIDRLAVERDRVILVDYKTNRVPPREARELPFSHVAQL 1139

Query: 1110 AVYVAVLREVFPGRTVEAALVWTDGPKLMPVPEKVMALALARL 1152
            A+Y  +L  ++PG+    AL++T+    + V +  MA ALA +
Sbjct: 1140 AIYREILAPLYPGKEFVCALIYTESAAFVRVDDDAMAEALAAI 1182