Pairwise Alignments

Query, 652 a.a., RNA polymerase sigma factor rpoD from Caulobacter crescentus NA1000 Δfur

Subject, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

 Score =  533 bits (1373), Expect = e-156
 Identities = 315/631 (49%), Positives = 412/631 (65%), Gaps = 34/631 (5%)

Query: 29  VKKFIKQAKARGYVTMDELNKVLPSEEVSPDAIEDTLAMLSEMGVNVVEAEEDAENAEGG 88
           +K+ I   + +GY+T  E+N  LP +   P+ +ED + M+++MG+NV EA  D ++    
Sbjct: 11  IKELIVLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEAAPDKDSLMLA 70

Query: 89  EVATRDENTTVIASDKPAAYD----RTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGR 144
           +  T DE     A+   AA +    RT DPVRMY+REMG+VELL+REGEI IAKRIE G 
Sbjct: 71  DADT-DEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGI 129

Query: 145 DTMIRGLCESALTFEAIMVWREELGTGRILLREVIDLEGTYAAINGVAAQPAAEDD---E 201
             ++  +     T + I+     + T    L +V  L G     +G+A  PAAE     +
Sbjct: 130 REVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDV--LSGYIDPDDGIAP-PAAEVPPPVD 186

Query: 202 GPAEPVDDEAGEAKAEGAEGEDEDDFDDGAGPTVSAMEGELREGVMAILDAIASEFEAFR 261
             A   DD+  +  AE A G+DED+ + G  P ++A              A++ + E  R
Sbjct: 187 AKAAKADDDTEDDDAE-ASGDDEDEVESGPDPIIAAQR----------FGAVSDQMEITR 235

Query: 262 KLQDKLVGSRLKGEDLSDADRKAYEGLSATIIQHLKTLKLNNNRIEALVEQLYAINKRLI 321
           K   K             A+++A   L A + +    +KL   + E LVE++ +  +RL 
Sbjct: 236 KALKKH----------GRANKQAIAELVA-LAELFMPIKLVPKQFEGLVERVRSALERLR 284

Query: 322 GLEGRLLRLA-DSYGISRGEFLKAYFGSELNPTWSEQVKAMGVRWTKFVENDSQSVTDIR 380
             E  +++L      + R +FL+ + G+E++ +W++ +     ++ + +      +   +
Sbjct: 285 AQERAIMQLCVRDARMPRADFLRQFPGNEVDESWTDALAKGKAKYAEAIGRLQPDIIRCQ 344

Query: 381 SEIAALATETGVPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQF 440
            ++ AL TETG+ I + + I + +  GE +AR+AKKEMVEANLRLVISIAKKYTNRGLQF
Sbjct: 345 QKLTALETETGLTIAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF 404

Query: 441 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 500
           LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN
Sbjct: 405 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 464

Query: 501 KIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGD 560
           K+ R SRQML E+GREPTPEEL E++ MP +K+RKVLKIAKEPIS+ETPIGD+EDSHLGD
Sbjct: 465 KLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGD 524

Query: 561 FIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFS 620
           FIED     PID A   +L+E T  VL+ LT RE +VLRMRFGI MNTDHTLEEVG+QF 
Sbjct: 525 FIEDSTMQSPIDVATVESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFD 584

Query: 621 VTRERIRQIEAKALRKLKHPSRSRKLRSFLD 651
           VTRERIRQIEAKALRKL+HP+RS  LRSFLD
Sbjct: 585 VTRERIRQIEAKALRKLRHPTRSEHLRSFLD 615