Pairwise Alignments

Query, 652 a.a., RNA polymerase sigma factor rpoD from Caulobacter crescentus NA1000 Δfur

Subject, 738 a.a., RNA polymerase sigma factor RpoD from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  528 bits (1360), Expect = e-154
 Identities = 305/632 (48%), Positives = 396/632 (62%), Gaps = 39/632 (6%)

Query: 29  VKKFIKQAKARGYVTMDELNKVLPSEEVSPDAIEDTLAMLSEMGVNVVEAEEDAE----N 84
           +K  IK  K RGY+T  E+N  LP + V  + +E  +++L++MGV V E   DAE    N
Sbjct: 137 LKTLIKLGKTRGYLTHGEINDHLPDKLVEAETLEVVVSLLNDMGVAVYEQTPDAETLLLN 196

Query: 85  AEGGEVATRDE---NTTVIASDKPAAYDRTDDPVRMYLREMGSVELLSREGEIAIAKRIE 141
             G   AT +E         S   + + RT DPVRMY+REMG+VELL+REGEI IAKRIE
Sbjct: 197 NTGPTAATEEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIE 256

Query: 142 AGRDTMIRGLCESALTFEAIMVWREELGTGRILLREVIDLEGTYAAINGVAAQPAAEDDE 201
            G + M+  + ES  T   I+V  E++  G++++  V+D         G A         
Sbjct: 257 GGLNDMMAAISESPATIAEILVMAEDIREGKVVISTVVD---------GFA--------- 298

Query: 202 GPAEPVDDEAGEAKAEGAEGEDEDDFDDGAGPTVSAMEGELREGVMAILDAIASEFEAFR 261
             A+  DD   E   +  +  D+DD   G+      +E EL+   ++  D + + FE   
Sbjct: 299 -DADEADDYVAEEDFDDYDEADDDDGKGGSKALTRKLE-ELKREALSRFDNMRTLFEKLH 356

Query: 262 KLQDKLVGSRLKGEDLSDADRKAYEGLSATIIQHLKTLKLNNNRIEALVEQLYAINKRLI 321
           K+ DK                  Y     +I + L +++     IE L   + +    + 
Sbjct: 357 KIYDK-----------EGYGTPGYLKTQTSITETLMSIRFTAKAIEKLCGTMRSQVDDVR 405

Query: 322 GLEGRLLRL-ADSYGISRGEFLKAYFGSELNPTWSEQVKAMGVRWTKFVENDSQSVTDIR 380
             E  L R+  D  G+ +  F+K +  + LN  W E+  A G  W+  +E +   V +++
Sbjct: 406 KKERELRRIIVDKCGMPQETFIKEFPPNLLNLKWVEKQAAAGKPWSVVIERNIPPVQELQ 465

Query: 381 SEIAALATETGVPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQF 440
             +  +     VP+   + I + + +GE  +R AKKEM+EANLRLVISIAKKYTNRGLQF
Sbjct: 466 QGLINIQASVVVPLTHLKDIHKRMNQGESTSRDAKKEMIEANLRLVISIAKKYTNRGLQF 525

Query: 441 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 500
           LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN
Sbjct: 526 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 585

Query: 501 KIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGD 560
           K+ R SRQ L E G EP    LAEK+ MP +K+RK++KIAKEPIS+ETPIGD++DSHLGD
Sbjct: 586 KMNRISRQHLQEFGFEPDASILAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGD 645

Query: 561 FIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFS 620
           FIED+    PI+AA+Q+ LRE    +L SLTPRE +VLRMRFGI M+TDHTLEEVG+QF 
Sbjct: 646 FIEDQANTAPIEAAMQAGLREVVKEILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFD 705

Query: 621 VTRERIRQIEAKALRKLKHPSRSRKLRSFLDS 652
           VTRERIRQIE+KA+RKLKHPSRS KLRSF+D+
Sbjct: 706 VTRERIRQIESKAVRKLKHPSRSDKLRSFIDT 737