Pairwise Alignments

Query, 652 a.a., RNA polymerase sigma factor rpoD from Caulobacter crescentus NA1000 Δfur

Subject, 615 a.a., RNA polymerase sigma factor RpoD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  524 bits (1350), Expect = e-153
 Identities = 313/633 (49%), Positives = 402/633 (63%), Gaps = 37/633 (5%)

Query: 29  VKKFIKQAKARGYVTMDELNKVLPSEEVSPDAIEDTLAMLSEMGVNVVEAEEDAENAEGG 88
           +K  + + K +GY+T  E+N  LP + V  D IED + M+++MG+ V+E   DA++    
Sbjct: 9   LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLLLA 68

Query: 89  EVATR-----DENTTVIASDKPAAYDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAG 143
           E  T      +E    + S   +   RT DPVRMY+REMG+VELL+REGEI IAKRIE G
Sbjct: 69  ENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 128

Query: 144 RDTMIRGLCESALTFEAIMVWREELGTGRILLREVIDLEGTYAAINGVAAQPAAEDDEGP 203
            + +    C  A   EAI    E+          + DL      I G    P AE++  P
Sbjct: 129 INQV---QCSVAEYPEAITYLLEQYDRVEAEEARLSDL------ITGFV-DPNAEEEMAP 178

Query: 204 -AEPVDDEAGEAKAEGAEGEDEDDFDDGAGPTVSAMEGELREGVMAILDAIASEFEAFRK 262
            A  V  E  +   +  E EDE+D DD A    ++++ EL               E F +
Sbjct: 179 TATHVGSELSQEDLDDDEDEDEEDGDDDAADDDNSIDPELAR-------------EKFAE 225

Query: 263 LQDKLVGSRLKGEDLSDADRKAYEGLSATII---QHLKTLKLNNNRIEALVEQLYAINKR 319
           L+ + V +R    D   A  +++      I+   +  K  +L   + + LV  +  +  R
Sbjct: 226 LRAQYVVTR----DTIKAKGRSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDR 281

Query: 320 LIGLEGRLLRLA-DSYGISRGEFLKAYFGSELNPTWSEQVKAMGVRWTKFVENDSQSVTD 378
           +   E  +++L  +   + +  F+  + G+E + TW     AM   W++ + + ++ V  
Sbjct: 282 VRTQERLIMKLCVEQCKMPKKNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVAEEVQR 341

Query: 379 IRSEIAALATETGVPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGL 438
              ++  +  ETG+ I+  + I + +  GE +AR+AKKEMVEANLRLVISIAKKYTNRGL
Sbjct: 342 CLQKLRQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGL 401

Query: 439 QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET 498
           QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET
Sbjct: 402 QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET 461

Query: 499 INKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHL 558
           INK+ R SRQML E+GREPTPEELAE++ MP +K+RKV KIAKEPIS+ETPIGD+EDSHL
Sbjct: 462 INKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVPKIAKEPISMETPIGDDEDSHL 521

Query: 559 GDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQ 618
           GDFIED    LP+D+A   +LR  T  VLA LT RE +VLRMRFGI MNTDHTLEEVG+Q
Sbjct: 522 GDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQ 581

Query: 619 FSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 651
           F VTRERIRQIEAKALRKL+HPSRS  LRSFLD
Sbjct: 582 FDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 614