Pairwise Alignments

Query, 652 a.a., RNA polymerase sigma factor rpoD from Caulobacter crescentus NA1000 Δfur

Subject, 613 a.a., RNA polymerase, sigma 70 (sigma D) factor from Escherichia coli BL21

 Score =  527 bits (1358), Expect = e-154
 Identities = 315/632 (49%), Positives = 402/632 (63%), Gaps = 37/632 (5%)

Query: 29  VKKFIKQAKARGYVTMDELNKVLPSEEVSPDAIEDTLAMLSEMGVNVVEAEEDAEN---A 85
           +K  + + K +GY+T  E+N  LP + V  D IED + M+++MG+ V+E   DA++   A
Sbjct: 9   LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLA 68

Query: 86  EGGEVATRDENTTVIASDKPAAYDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRD 145
           E        E    + S   +   RT DPVRMY+REMG+VELL+REGEI IAKRIE G +
Sbjct: 69  ENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGIN 128

Query: 146 TMIRGLCESALTFEAIMVWREELGTGRILLREVIDLEGTYAAINGVAAQPAAEDDEGP-A 204
            +    C  A   EAI    E+          + DL      I G    P AE+D  P A
Sbjct: 129 QV---QCSVAEYPEAITYLLEQYDRVEAEEARLSDL------ITGFV-DPNAEEDLAPTA 178

Query: 205 EPVDDEAGEAKAEGAEGEDEDDFDDGAGPTVSAMEGELREGVMAILDAIASEFEAFRKLQ 264
             V  E  +   +  E EDE+D DD +    ++++ EL               E F +L+
Sbjct: 179 THVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAR-------------EKFAELR 225

Query: 265 DKLVGSR----LKGEDLSDADRKAYEGLSATIIQHLKTLKLNNNRIEALVEQLYAINKRL 320
            + V +R     KG   + A  +  +     + +  K  +L   + + LV  +  +  R+
Sbjct: 226 AQYVVTRDTIKAKGRSHATAQEEILK-----LSEVFKQFRLVPKQFDYLVNSMRVMMDRV 280

Query: 321 IGLEGRLLRLA-DSYGISRGEFLKAYFGSELNPTWSEQVKAMGVRWTKFVENDSQSVTDI 379
              E  +++L  +   + +  F+  + G+E + TW     AM   W++ + + S+ V   
Sbjct: 281 RTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRA 340

Query: 380 RSEIAALATETGVPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQ 439
             ++  +  ETG+ I+  + I + +  GE +AR+AKKEMVEANLRLVISIAKKYTNRGLQ
Sbjct: 341 LQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQ 400

Query: 440 FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 499
           FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI
Sbjct: 401 FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 460

Query: 500 NKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLG 559
           NK+ R SRQML E+GREPTPEELAE++ MP +K+RKVLKIAKEPIS+ETPIGD+EDSHLG
Sbjct: 461 NKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLG 520

Query: 560 DFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQF 619
           DFIED    LP+D+A   +LR  T  VLA LT RE +VLRMRFGI MNTDHTLEEVG+QF
Sbjct: 521 DFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQF 580

Query: 620 SVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 651
            VTRERIRQIEAKALRKL+HPSRS  LRSFLD
Sbjct: 581 DVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612