Pairwise Alignments

Query, 246 a.a., integral membrane protein from Caulobacter crescentus NA1000 Δfur

Subject, 527 a.a., inner membrane protein from Escherichia coli BL21

 Score = 68.9 bits (167), Expect = 2e-16
 Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 30/212 (14%)

Query: 19  LLQVLMIDLVLAGDNAVAVGLAAGGLPAKERKKVILYGLGAAVLLRITFALITTWLLGVV 78
           L+ +++I+LVL  DN V + + A  LP K+R +  + GL  A+L+R+      +WL+ + 
Sbjct: 13  LITLIVIELVLGIDNLVFIAILAEKLPPKQRDRARVTGLLLAMLMRLLLLASISWLVTLT 72

Query: 79  G---------------LLLAGGFLLLWVCWKMWRELREQTTHDEADAMAMIDDDPSTEPR 123
                           ++L GGF LL   +K   EL E+           ++   S  P 
Sbjct: 73  QPLFSFRSFTFSARDLIMLFGGFFLL---FKATMELNER-----------LEGKDSNNPT 118

Query: 124 ARPNKTFKAAFLQVLIADVSMSLDNVLAVAGAAREHPGILIFGLLLSIVLMGVAATAIAN 183
            R    F     Q+++ D   SLD+V+   G   +H  +++  ++++I LM +A+  +  
Sbjct: 119 QRKGAKFWGVVTQIVVLDAIFSLDSVITAVGMV-DHLLVMMAAVVIAISLMLMASKPLTQ 177

Query: 184 LLHKHRWIGFVGLAIVLYVAAHMIWTGHRSVV 215
            ++ H  I  + L+ +L +   ++  G   V+
Sbjct: 178 FVNSHPTIVILCLSFLLMIGFSLVAEGFGFVI 209