Pairwise Alignments

Query, 438 a.a., transporter, major facilitator superfamily from Caulobacter crescentus NA1000 Δfur

Subject, 413 a.a., 12-TMS multidrug efflux protein homolog from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 71.2 bits (173), Expect = 6e-17
 Identities = 103/418 (24%), Positives = 166/418 (39%), Gaps = 44/418 (10%)

Query: 11  NRRAFAILFGVSVATALGNTGMLSVLPAIGREIGIPDALVAGIFSLSAVLWAVTSPFWAR 70
           N+R    +F +    A     ++SVLP   RE+G    ++  I +  A      +P    
Sbjct: 18  NKRRILPVFLLVGLYAASTAAVMSVLPFYIREMGGSPLIIGIIIATEAFSQFCAAPLIGH 77

Query: 71  QSDLRGRKPLIMLGLAGFAVSMTLCAIVVSAGLHHLAPPMVIFVLFLLARALFGGFGSAA 130
            SD  GRK ++++ LA  A+S+ L A              ++F+  LLAR LFG   SA 
Sbjct: 78  LSDRVGRKRILIVTLAIAAISLLLLA----------NAQCILFI--LLARTLFG--ISAG 123

Query: 131 N-PATQAYLAERTSREERTQTMASLAGAFGLGTVVGPLLAPLFVLPGVGLAGPMVAFAAL 189
           N  A  AY+A+ T    R Q +  L G  GLG +VG  ++    L  + L+ P+ A   L
Sbjct: 124 NLSAAAAYIADCTHVRNRRQAIGILTGCIGLGGIVGAGVSGW--LSRISLSAPIYAAFIL 181

Query: 190 AAGMLVVVHRGLPENFTPGRGDTPPRRRGMGLPWRGEGAALWKDPRLKPFLI-------- 241
             G  +V   GL +  T  R  T  +             A+ K P L+  +I        
Sbjct: 182 VLGSALVAIWGLKDPSTTSR--TTDKIAAF------SARAILKMPVLRVLIIVMLCHFFA 233

Query: 242 YGFLVATCQTAQTQTLGFLIIDKLGLSPIKAQGFITLAMAAGAVAGLLAQWGLIRMFRMG 301
           YG   +      + T    I + L   P KA  ++ +A     +   L   G +  +   
Sbjct: 234 YGMYSSQLPVFLSDT---FIWNGLPFGP-KALSYLLMADGVINIFVQLFLLGWVSQY-FS 288

Query: 302 PRELMRWGVAAAALGNIVVAFAPDYAAVAIGYAIASLGYGFARPGFTAGASLSVEAKDQA 361
            R+L+    A    G +    A     +       S+    A+P + A  S+ V    Q 
Sbjct: 289 ERKLIILIFALLCTGFLTAGIATTIPVLVFAIVCISIADALAKPTYLAALSVHVSPARQG 348

Query: 362 GAAGAIAAINGLNVVVAPL---FVLLYEQIG-WAPFVLNTVI--LLAMLVYAMRQVML 413
              G   A+  +   ++P+   FVL Y   G W    ++  I  L+  ++Y  +  +L
Sbjct: 349 IVIGTAQALIAIADFISPVLGGFVLGYALYGVWIGIAISVAIIGLVTAMIYLSKSSVL 406