Pairwise Alignments

Query, 936 a.a., DNA relaxase/conjugal transfer nickase-helicase trwC from Caulobacter crescentus NA1000 Δfur

Subject, 969 a.a., relaxase from Escherichia coli ECOR27

 Score =  357 bits (916), Expect = e-102
 Identities = 279/934 (29%), Positives = 441/934 (47%), Gaps = 77/934 (8%)

Query: 42  ADDYHAEGGAAPSRWQGSGAAALGLEGEVDPERFRQLLDGVLSDHVALGARRDEGR-QHR 100
           ADDY+A+ G A  +WQG+GA  LGL GEV+ +RF +LLDG ++D +++  +      + R
Sbjct: 23  ADDYYAKDGNA-MQWQGAGAEELGLTGEVEQKRFAKLLDGKVTDDISVMRKTANSESKER 81

Query: 101 PGWDLTLSAPKSISIMALVAGDRRLHAAHAAAVEAALAFTERHAGGTRIRDGERVAHVRT 160
            G+DLT SAPK +++ ALV GD+R+  AH  AV  A+   ER A G R    ++     T
Sbjct: 82  LGYDLTFSAPKGVTLQALVNGDKRIIEAHDRAVTKAIEEAERLALG-RFTVNKKTHVENT 140

Query: 161 GALAMATFQHETSRAQDPQLHTHAVILNMTRDLEGTWRSLDSRALYQLQKTIGEVYRQEL 220
             L +  F+HETSR  DP LHTHA ++N+T+  +G WRSL +  +      +G VY+ EL
Sbjct: 141 NKLIVGKFRHETSRELDPDLHTHAFVMNLTKTSDGKWRSLTNDGIVNSLTLLGNVYKSEL 200

Query: 221 AGAVRALGYAIEVGKESMFEISDVPASVREAFSERARQVEAHLATKGLTRATATAEEKQA 280
           A  +   GY +   +   F+++         FS+R++Q+EA LA  GL+R TA+ E+K A
Sbjct: 201 ARELELAGYNLRYDRNGTFDLAHFSQEQIAQFSQRSQQIEAELAKNGLSRETASHEQKNA 260

Query: 281 ATLYTRASKKAADRAELSRAWRVEADGL--GFSSEARRSLLTEALDRAEASKAIRDRGAV 338
           A L TR SK   DR  L   W+  A  L   F S   +    + + R     A+      
Sbjct: 261 AALKTRKSKGEVDRDVLYEGWKNRAKELQIDFDSREWKGAANDDIARNTQPAALEKPIEY 320

Query: 339 LAQDAVRFAAEKLGERQAIFSRAELEREAGRKAIGLATRTEIMAA--------------- 383
            A   + FA   L ERQ++ +  EL   A +   G  T  +I AA               
Sbjct: 321 QADKVMTFAIRSLTERQSVITERELMDVAMKHGYGRLTLDDIRAARERAITSGNLIKEEA 380

Query: 384 ------VDKRQQS-----------------HQLEARAL------RSPIGLDLEGFTTDRA 414
                  +K+QQ+                 ++ EAR L         +      FTT  A
Sbjct: 381 TYAAATTNKKQQNVAMTREQWVTELVKAGRNKDEARKLVDKGITNGRLVQQKPRFTTQLA 440

Query: 415 IAHEKRLLEIEREGRNALAPIVPPIEASRIINAASLAASERGLAWSDDQRRATKAVLTSR 474
              E+ +L++EREGR  +         +R  +   LA+         +Q +A   ++ + 
Sbjct: 441 QQRERNILKMEREGRGKI-----QTPYTREFSEGWLASR----TLKPEQLKAVMGIIHTP 491

Query: 475 SAVVGVQGFAGTAKTTTVLATLAKAAAEQGYQVKALAPSASAAITLGEALDLEGRTIARH 534
           +  + V GFAGT K + +  + A    EQG  V +LAP  S    L +A  LE RT+ + 
Sbjct: 492 NQFISVHGFAGTGK-SYMTKSAADFLKEQGVHVTSLAPYGSQVKAL-QAEGLESRTL-QS 548

Query: 535 LVERPNARPSARELWIVDEASLVSARDMARLLDEAQRRGARTLLVGDAHQLGSVGAGAAF 594
            +   + +     +  +DEA ++ AR M   +   +  GAR + +GD  Q  +V AG  F
Sbjct: 549 FLRASDKKIGPGSVVFIDEAGVIPARQMEETMRVIRDAGARAVFLGDTKQTKAVEAGKPF 608

Query: 595 RQLQDAGLETAHLTKIVRQSNTLTLEAVEATLAGHARRAFDALDRGGGQIIEAQSVEDRQ 654
            QL  AG+ETA++  I RQ +   L+A      G  + +   +      I+E ++ + R 
Sbjct: 609 EQLIKAGMETAYMKDIQRQKDPELLKAALNAAEGKIKASLTHVT----SIVEEKNHDQRY 664

Query: 655 ALIAAHFAQLDSAQRRRTLIIDPSREGREQLTARIRAELIAAGHLGKAAVTVTSLVAKDL 714
             I   +  +    R   LII  + + R+++ A I+AEL   G      +    L   D 
Sbjct: 665 RRIVGDYVAMPPTDRANALIITGTNDSRKKINAYIQAELGLKGQ----GINYPLLNRLDT 720

Query: 715 TQAERKEAGSYAPGDIVTFARTLTGKAVAKDTAYEVQAVDARRRTVTLSDGRDARIDWAP 774
           TQA+R+ +  Y  G ++   R  +   + +   Y V       + +T+SDG    I ++P
Sbjct: 721 TQAQRQHSKYYEKGAVIIPERDYS-NGLKRGAVYTVLDTGPGNK-LTVSDGSGDTIAFSP 778

Query: 775 HRWGSAEAFEPVDRELRQGDRIEFTRNNMRLHQVNGLQGEIVSLDVEARKAQVRTDRGHI 834
            R+     +     EL  GD++  TRN+  L   NG + ++    V++ +  +  ++G +
Sbjct: 779 ARFSKLSVYSVEKTELAVGDQVRITRNDAHLDLANGDRFKVKG--VQSGEVLLENEKGRL 836

Query: 835 RTLDLNALQDRHFRHAYVQTAFAAQGRTTDHVLFHAESQRSNLIDQATLYVAISRARHGA 894
             +D N  +  +   AY  T  +AQG T D V  + ++ RS    +   YVA++RA+H A
Sbjct: 837 VKIDAN--KPMYLGLAYASTVHSAQGLTCDKVFINMDT-RSLTTAKDVYYVAVTRAKHEA 893

Query: 895 TIVTDDRAKVIRGVEARSGRRLTALGAEGSGREA 928
            I TDD  K+ +   +R G +  AL  E   R A
Sbjct: 894 VIYTDDEKKLDKAA-SREGFKTAALELEQLKRYA 926