Pairwise Alignments

Query, 1117 a.a., error-prone DNA polymerase from Brevundimonas sp. GW460-12-10-14-LB2

Subject, 1035 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  830 bits (2145), Expect = 0.0
 Identities = 491/1081 (45%), Positives = 641/1081 (59%), Gaps = 68/1081 (6%)

Query: 4    PAYAELATASNFSFLRGASHPKDLVLTAILRGHSGLGLADRNTVSGVVRAWSALRTIRED 63
            P Y EL   SNFSFLRGASHP++LV  A   G+  L L D  +++GVVRA  A +  R  
Sbjct: 7    PDYVELRCLSNFSFLRGASHPEELVERAAALGYQALALVDECSLAGVVRAHVAAKKHR-- 64

Query: 64   GLSPPDVVRDGGGPGEVIYVEDPLNDPALSQMVKDRAATFKLATGARLVFNDGTP-DIIA 122
                                                   F+L  G++       P  ++ 
Sbjct: 65   ---------------------------------------FQLLIGSQFQVRCDAPFTLVV 85

Query: 123  YPETRAGWGRLTRLLTLGNRRAVKGQCEIGLRDLLA-ASEDLLLILMPDARLDG--VDKV 179
                  G+G L   +T   R A KG   + + D+ A A  D ++I +PD   D   +D V
Sbjct: 86   LACNLNGYGNLCEFITRLRRSAPKGSYRLAIGDIDAQALADCVVIAVPDRHSDQDPMDTV 145

Query: 180  LAQLTDASPGAVWLGAVMGRKGDDRRRLSRLKTLSERSGAPLLAVNNVLYHDAIQRDLQD 239
               L     G  WLG     + DD  RL RL+  SE +  PL+AV +V  H   ++ L D
Sbjct: 146  ARWLLQHFRGRCWLGVEQLCRFDDEMRLHRLRQSSELTAVPLVAVGDVRMHVRSRKPLHD 205

Query: 240  VLTCIREGVTIEDAGRRLNANAERWLKPPAEMARLFRDAPEALVETQHVLSRIGFDLGDI 299
            VLT  R G  + + G  L  +AE+ L+    + +L+    + L ET  V +R  F L ++
Sbjct: 206  VLTATRIGKPLTECGFVLEPSAEQRLRGRLTLGQLY--PADLLAETLAVAARCDFSLDEL 263

Query: 300  SYQYPEETTPPDETPQGWLEQLTWRHAEMRYPDGVPHKVKALLDKELIFIAKAGYAPYFL 359
             YQYP E  P  ETPQ  L QLT   A  R+P G P      ++ EL  IA   Y  YFL
Sbjct: 264  RYQYPSEVIPEGETPQSHLRQLTEAGARRRWPQGTPEAFAQQIEHELELIAYKQYEHYFL 323

Query: 360  TIYDIVRVANDKRILCQGRGSAANSAVCYVLGITAVDPAESDLLFERFLSTDRGEPPDID 419
            T++DIV  A  K ILCQGRGSAANS VCY LGIT VDP  + LLFERF+S +R EPPDID
Sbjct: 324  TVHDIVAFARSKDILCQGRGSAANSVVCYCLGITEVDPGRTGLLFERFISRERDEPPDID 383

Query: 420  VDFEHERREEIIQHIYTRYGRARAGIAATVIRYRPKSAIRDVGKALGLTE---DVTARLA 476
            VDFEHERREE+IQ++Y +YGR RA + ATVI YRP+SA+RDVGKALG  E   DV AR  
Sbjct: 384  VDFEHERREEVIQYLYGKYGRERAALTATVISYRPRSALRDVGKALGFAEGSLDVLAR-- 441

Query: 477  SSQWGSWGSEIGERHVKQAGLDPANPMIQRAVKLAMRLLNFPRHLSQHVGGFVLTQDRLD 536
             S+W   G  I    +++AGLD  +  +++ ++L   L+ FPRHLSQH GGFVLTQ  L 
Sbjct: 442  QSRWWD-GHAIAPERLQEAGLDTGDLKVRQLLELTSTLMGFPRHLSQHTGGFVLTQLPLS 500

Query: 537  ELVPIGNAAMPDRTFIEWDKDDIDALRLMKVDVLALGMLTCIRKAFDLIRAHHGDDWALH 596
             LVPI NA M DRT IEWDKDD+DA+ L+KVDVLALGMLT +RKA  LI    G  + + 
Sbjct: 501  RLVPIENATMKDRTVIEWDKDDLDAVGLLKVDVLALGMLTALRKAMALIGEKQGRAFGMQ 560

Query: 597  TIPRDDPAVYDMLCKGDSIGVFQVESRAQINMLPRLKPRRLYDLVIQVAIVRPGPIQGDM 656
             IP  D   YDM+C  D++GVFQ+ESRAQ++MLPRL+PR  YDLVI+VA+VRPGPIQG  
Sbjct: 561  DIPDGDDPTYDMVCAADTVGVFQIESRAQMSMLPRLRPRSYYDLVIEVALVRPGPIQGGA 620

Query: 657  VHPYLRRRNGLEEPEYSKPGPQYPHDELEQVLKKTLGVPLFQEQAMKVAMVAAEFNEKEA 716
            VHPYL RR G  +   S PGP +    L+  L +T+GVP+FQEQ M++A+++A F   EA
Sbjct: 621  VHPYLNRRQG--KVPVSFPGP-HGGRALKAALGRTMGVPIFQEQCMQIAVLSAGFTPGEA 677

Query: 717  NGLRKAMGTFRGDGTLHNYEDRMVGRMIERGYDPTFAQRCFDQIKGFGSYGFPESHAASF 776
            + LR+AM  ++  G +  YE+R+V  M +RGY+  FAQ  F+QIKGF SYGFPESHAASF
Sbjct: 678  DELRRAMAAWKRHGNVQKYEERLVKGMTDRGYELEFAQSIFEQIKGFSSYGFPESHAASF 737

Query: 777  AQLVYVSSWIKHHYPAAFACALLNSQPMGFYAPAQLVRDAREHGVEVRPVDVSYSGWNNS 836
            A LVYVS+WIK H+PA F  ALLNSQP+GFY P+QLV+DA+ HGV VRPVDV +S  +++
Sbjct: 738  ALLVYVSAWIKCHHPAEFLTALLNSQPLGFYTPSQLVQDAKRHGVVVRPVDVLHSDRDST 797

Query: 837  LEGSDRTPALRIGLRQIEGFREDWAEALAAARA-FSLSNIETLARRAALSSAAMRKLADA 895
            +   D   A+R+G+R + G  +D  E +  ARA  +  N + LARRA L    M+ LA A
Sbjct: 798  I---DADGAVRLGMRLVSGIGQDATERIVQARAQQAFRNAQDLARRAGLDQPQMKALAAA 854

Query: 896  DAFRSLGLDRREALWAVRRLPDDAPLPLFAAADARELGAEPDARLPVMPLGEHVAADYQT 955
            DA   L   RR+ +W    L     L   A  D      E    LP  P GE V  DY +
Sbjct: 855  DALMGLSGHRRQQVWDAAALRSPPALLKGAPVD------EAPLALPAAPEGEAVVWDYAS 908

Query: 956  LRLSLKAHPMAILRPIFEAEGLLNCAQTDARRGGALVRVAGVVLVRQRPG-KGNAIFVTL 1014
              L+L+ HP+A+LR       L+  AQ      G LVR  G+V +RQ+PG     +FV+L
Sbjct: 909  TGLTLRRHPLALLREELAKRRLMTAAQLQDAPDGRLVRHCGIVTLRQQPGTSSGVVFVSL 968

Query: 1015 EDETGIINVVLWARMFEQFRREVMAARLMAVEGVVEKSPEGVVHLVARRVIDRSSELSRL 1074
            EDETG++ V++W R+ E+ R  +  ARL+AV G  ++  E V +L+A  + D +  L+ L
Sbjct: 969  EDETGVVQVIVWQRIRERQRAVLTGARLLAVYGRWQREGE-VRNLIAGHLEDLTPLLNGL 1027

Query: 1075 S 1075
            S
Sbjct: 1028 S 1028