Pairwise Alignments

Query, 1117 a.a., error-prone DNA polymerase from Brevundimonas sp. GW460-12-10-14-LB2

Subject, 1085 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

 Score =  963 bits (2489), Expect = 0.0
 Identities = 532/1101 (48%), Positives = 703/1101 (63%), Gaps = 67/1101 (6%)

Query: 5    AYAELATASNFSFLRGASHPKDLVLTAILRGHSGLGLADRNTVSGVVRAWSALRTIREDG 64
            +YAEL   ++FSFLRGAS  ++L  TA   G   +G+ DRN+++G+VRA  A        
Sbjct: 2    SYAELQVTTHFSFLRGASSAQELFETAKALGIQAIGVVDRNSLAGIVRALEA-------- 53

Query: 65   LSPPDVVRDGGGPGEVIYVEDPLNDPALSQMVKDRAATFKLATGARLVFNDGTPDIIAYP 124
                                              RA   +L  G RL   DG   ++ YP
Sbjct: 54   ---------------------------------SRATDIRLVVGCRLDLTDGM-SLLVYP 79

Query: 125  ETRAGWGRLTRLLTLGNRRAVKGQCEIGLRDLLAASEDLLLILMPDARLDGVDKVLAQLT 184
              RA + RLTRL+TLG  R  K  C +   D++A S  ++ +L+PD         L ++ 
Sbjct: 80   TDRAAYSRLTRLITLGKSRGGKNNCILHWDDVIAYSRGMIGVLVPDLPDATCAAQLRRIA 139

Query: 185  DASPGAVWLGAVMGRKGDDRRRLSRLKTLSERSGAPLLAVNNVLYHDAIQRDLQDVLTCI 244
            +A     ++   + R+ +D+ RL  +  L+ R     +  N+VL+H+  +R LQD++TCI
Sbjct: 140  EAFGDRAYVSLCLRRRQNDQMRLHEISNLAARFKVKTVVTNDVLFHEPGRRQLQDIVTCI 199

Query: 245  REGVTIEDAGRRLNANAERWLKPPAEMARLFRDAPEALVETQHVLSRIGFDLGDISYQYP 304
            R   TI+D G     +A+R+LKPP EM RLF    EAL  T  ++ R  F L +++YQYP
Sbjct: 200  RHNTTIDDVGFERERHADRYLKPPEEMERLFSRYSEALARTLEIVRRCKFSLEELTYQYP 259

Query: 305  EETTPPDETPQGWLEQLTWRHAEMRYPDGVPHKVKALLDKELIFIAKAGYAPYFLTIYDI 364
            EE   P +  Q  LE   W  A  RYP+G+P  V   +  EL  I    YAPYFLT++ I
Sbjct: 260  EEAIVPGKDAQASLEHYVWECAPDRYPEGLPQDVLKTVRHELDLIRTMKYAPYFLTVFSI 319

Query: 365  VRVANDKRILCQGRGSAANSAVCYVLGITAVDPAESDLLFERFLSTDRGEPPDIDVDFEH 424
            VR A  + ILCQGRGSAANSAVCY+LGIT++DP+ +DLLFERF+S +R EPPDIDVDFEH
Sbjct: 320  VRFARSQGILCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEH 379

Query: 425  ERREEIIQHIYTRYGRARAGIAATVIRYRPKSAIRDVGKALGLTEDVTARLASSQWGSWG 484
            ERREE+IQ IY  Y + +A + ATV RYR K AIRDVGKALGL EDV   L+S  W SW 
Sbjct: 380  ERREEVIQWIYKTYTKDKAALCATVTRYRAKGAIRDVGKALGLPEDVIKALSSGMW-SWS 438

Query: 485  SEIGERHVKQAGLDPANPMIQRAVKLAMRLLNFPRHLSQHVGGFVLTQDRLDELVPIGNA 544
             E+ +R++++  L+P +  +   +KLA +L+  PRHL QH GGFVLT DRLD+LVPI  A
Sbjct: 439  EEVPDRNIRELNLNPDDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPA 498

Query: 545  AMPDRTFIEWDKDDIDALRLMKVDVLALGMLTCIRKAFDLIRAHHGDDWALHTIPRDDPA 604
             M DR  IEWDKDD++AL+ MKVDVLALGMLTC+ KAFDLIR H G    L  I ++D A
Sbjct: 499  TMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMAKAFDLIREHKGQQLDLSNIEQEDAA 558

Query: 605  VYDMLCKGDSIGVFQVESRAQINMLPRLKPRRLYDLVIQVAIVRPGPIQGDMVHPYLRRR 664
             Y M+ K D++G FQ+ESRAQ+ MLPRLKPR  YDLV+QVAIVRPGPIQGDMVHPYLRRR
Sbjct: 559  TYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRRR 618

Query: 665  NGLEEPEYSKPGPQYPHDELEQVLKKTLGVPLFQEQAMKVAMVAAEFNEKEANGLRKAMG 724
             G E  EY  P       ELE VL KTLGVPLFQE AM+VAMV A F   EA+ LRK+M 
Sbjct: 619  EGKEPVEYPTP-------ELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMA 671

Query: 725  TFRGDGTLHNYEDRMVGRMIERGYDPTFAQRCFDQIKGFGSYGFPESHAASFAQLVYVSS 784
            TF+  G +  ++D++V  M++ GY P FA++ F Q++GFGSYGFPESHAASFA + Y S+
Sbjct: 672  TFKFTGGVSRFKDKLVSGMVKNGYSPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASN 731

Query: 785  WIKHHYPAAFACALLNSQPMGFYAPAQLVRDAREHGVEVRPVDVSYSGWNNSL---EGSD 841
            +IK HYP  F  ALLNSQPMGFYAPAQ+V DA +HGVEVRPV V+ S W+ +L   EGSD
Sbjct: 732  YIKCHYPDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRWDCTLERIEGSD 791

Query: 842  RTPALRIGLRQIEGFR-EDWAEALAAARAFSLSNIETLARRAALSSAAMRKLADADAF-R 899
            R  A+R+G RQ++G    D A  +AA      ++++ + RR+++ + A+ +LA+ADAF  
Sbjct: 792  R-HAVRLGFRQVKGLAVADAARIVAARMNNPFASVDDMWRRSSVPTEALVQLAEADAFLP 850

Query: 900  SLGLDRREALWAVRRLPDDAPLPLFAAADARELGA-----EPDARLPVMPLGEHVAADYQ 954
            SL L+RR+ALWA++ L D+ PLPLFAAA  RE  A     EP+  L  M  G +V  DY 
Sbjct: 851  SLKLERRDALWAIKALRDE-PLPLFAAAAEREATAIAEQQEPEVALRQMTDGHNVIEDYS 909

Query: 955  TLRLSLKAHPMAILRPIFEAEGLLNCAQTDARRGGALVRVAGVVLVRQRPGKGNAI-FVT 1013
               L+L+ HP+A LR    A  ++ CA+    R G  V  AG+VLVRQ+PG    + F+T
Sbjct: 910  HTGLTLRQHPVAFLRRDLSARNIIPCAEAMNARDGRWVYTAGLVLVRQKPGSAKGVMFIT 969

Query: 1014 LEDETGIINVVLWARMFEQFRREVMAARLMAVEGVVEKSPEGVVHLVARRVIDRSSELSR 1073
            +EDETG  N+V+W  +FE+ R  V+ + +MA+ G +++  E VVHLVA+++ D S++L  
Sbjct: 970  IEDETGPANIVVWPSLFEKRRSVVLGSSMMAINGRIQREGE-VVHLVAQQLFDLSADLVG 1028

Query: 1074 LSQEHDTAVQL--ARADVVAH 1092
            L+ + DT  +L   R D  AH
Sbjct: 1029 LA-DRDTGFRLPAGRGDEFAH 1048