Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Brevundimonas sp. GW460-12-10-14-LB2

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

 Score =  782 bits (2019), Expect = 0.0
 Identities = 468/1142 (40%), Positives = 658/1142 (57%), Gaps = 36/1142 (3%)

Query: 14   GGAPEGLDALIVAERIKAGGGVGLFVARDFQRSGSFVQAFQFFSKDIEVLDYPAWDCLPY 73
            G  P    +L +AE   A     L +  D Q +    Q   FF+ D+ VL +P W+ LPY
Sbjct: 19   GNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHFPDWETLPY 78

Query: 74   DRLSPTAGIAAQRMATLTRLAMRKPGDAPVLVVTTVSAAMQRTPPKSVTTQAGFETKVGR 133
            D  SP   I +QR+A+L RL    P  A  ++V  ++ A+ R  P      +     +G+
Sbjct: 79   DLFSPHQDIISQRIASLYRL----PELAHGVLVVPITTALHRLAPTKFLLGSSLVLDIGQ 134

Query: 134  DLDIQALERYFAANGYVRASTVSERGEFAVRGGVVDVYPPGFEEPVRLDMFGSELESIRT 193
             LD++ +     A+GY    TV E GEFAVRG ++D++P G + P R+D+F  E+E++RT
Sbjct: 135  KLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDDEIETLRT 194

Query: 194  FDPETQRSTGQMTFVSLAPVSEALLDAAAISRFRTGYLNLFGAPGDD-PLYATISEGARR 252
            FDPE QRS  ++  V L P  E  L   A++RF+  +   F       P++  +S G   
Sbjct: 195  FDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFDVDFRRCPIFQDLSSGITP 254

Query: 253  QGMEQWLPLFYETLDSLFDYLPDDAAIFLDNQVETARAERWDLVADAYDARAEAAKAKGQ 312
             G+E +LPLF++   +LFDYLP D  +F    +E A    W+ V + Y+ R         
Sbjct: 255  AGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRYEERRVDP----- 309

Query: 313  ASANRALPPKRLYLDAGDWNQALAG--RVVRRFTPFSTGGEDAGGRLGRTFAAERAQDSV 370
              +   LPP  L+L   D    L    RVV       TG     GR    F A    D  
Sbjct: 310  --SRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGA----GR--ERFPAATLPDLA 361

Query: 371  NLFEAVAAHAAALKADGK---RVLFASWTEGSSERLATMLADHGLDHIVAVRDWADVQAA 427
               +A     A     G    RVLF + + G  E L  +L    L     V  W D   +
Sbjct: 362  IQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKL-RPKTVDSWPDFVKS 420

Query: 428  PKDLYLRGVLPVEHGFVTD--AVAVISETDILGDRLA--RPRKKRRASN---FLAEASAL 480
             + L +  + P++ G + D  A+A+I+E+ + G R+   R R+KR  +N    +   + L
Sbjct: 421  KERLAIT-IAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTEL 479

Query: 481  TTGDLVVHLDHGIGRYEGLKTLEIQQAPHDCLELFYAGESKLYLPVENIDLLTRY-GSDS 539
              G  VVH+DHG+GRY GL+TLEI     + L + YA  +KLY+PV N+ L+ RY GSD 
Sbjct: 480  REGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGSDD 539

Query: 540  EGVQLDKLGGAGWQARKAKAKERLRAMAEGLIALAAKRALRETDAVTPPPGLFAEFCARF 599
                L +LG   WQ  K KA E++R +A  L+ + A+RA RE  A   P   +A F A F
Sbjct: 540  ALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGF 599

Query: 600  PYEETDDQLNAIGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIVAP 659
             +EET DQ   I  V  D+    PMDRL+CGDVGFGKTEVA+RAAF+    G+QVAI+ P
Sbjct: 600  AFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVP 659

Query: 660  TTLLARQHYKTFTERFAGWPVKVRQLSRMVGSKEATETRAGLKDGSVEIVVGTHAVLSEQ 719
            TTLLA+QHY +F +RFA WPV V  +SR   +KE     A L +G ++IV+GTH +LS+ 
Sbjct: 660  TTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDD 719

Query: 720  VGFRDLGLVIVDEEQHFGVKHKEKLKTLRADVHLLTLTATPIPRTLQMALSGIREMSIIA 779
            V  ++LGLVI+DEE  FGV+ KE+LK LR++V +LTLTATPIPRTL MA+SG+R++SIIA
Sbjct: 720  VKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIA 779

Query: 780  TPPVDRLAVRTYVTPWDPVLVREALLREKYRGGQAYYVAPRLKDLPAIEKFLREQVPEVK 839
            TPP  RL+VRT+V   +   V+EALLRE  RGGQ YY+   +K +      L E VPE +
Sbjct: 780  TPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEAR 839

Query: 840  FVVGHGQMSATQLEEVMSAFYDGEYDVLVSTTIVESGLDIPTANTLIVHRADMFGLAQLY 899
              +GHGQM   +LE+VMS FY   ++VL+++TI+E+G+D+P+ANT+I+ RAD FGLAQL+
Sbjct: 840  IAIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLH 899

Query: 900  QIRGRVGRSKARAFAYLTTDAVKPMTLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGN 959
            Q+RGRVGRS  +A+AYL T   + +T  AE+RL+ + +  +LGAGF LA++DL+ RG G 
Sbjct: 900  QLRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGE 959

Query: 960  LLGDEQSGHIREVGVELYQQMLEDAVAELREKGEGQAVDR--GWSPSINVGASVLIPEDY 1017
            LLGD QSG I+ VG  LY +MLE AV  +R KGE   +D+  G  P IN+    LIPE+Y
Sbjct: 960  LLGDGQSGQIQAVGFTLYMEMLERAVKAIR-KGEQPNLDQPLGGGPEINLRLPALIPEEY 1018

Query: 1018 VPDLNVRLSLYRRLSDAEQAEDREALAAELIDRFGPLPDEAQQLLKIVGIKSNCRKACIE 1077
            +PD++ RL LY+R++ A   E  + L  E+IDRFG LP+  + L+++  +K    +  I+
Sbjct: 1019 LPDVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIK 1078

Query: 1078 KIDIGPRGAVLTLRDNSFPNPAGLVGLIQKNHAFWKIRPDQKIVVSGDWPTAEERLKVAE 1137
            K+D GP+G  +     +  +P  L+ LIQ     +K               AEER    E
Sbjct: 1079 KVDAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLE 1138

Query: 1138 RI 1139
             +
Sbjct: 1139 AL 1140