Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Brevundimonas sp. GW460-12-10-14-LB2

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

 Score =  779 bits (2012), Expect = 0.0
 Identities = 451/1108 (40%), Positives = 653/1108 (58%), Gaps = 34/1108 (3%)

Query: 14   GGAPEGLDALIVAERIKAGGGVGLFVARDFQRSGSFVQAFQFFSKDIEVLDYPAWDCLPY 73
            G  P    +L +AE   + G   L +  D Q +    Q  +FF+ D+ VL +P W+ LPY
Sbjct: 19   GNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDWETLPY 78

Query: 74   DRLSPTAGIAAQRMATLTRLAMRKPGDAPVLVVTTVSAAMQRTPPKSVTTQAGFETKVGR 133
            D  SP   I +QR+A+L RL     G    ++V  ++ A+ R  P      +     VG+
Sbjct: 79   DLFSPHQDIISQRIASLYRLPELSHG----ILVVPITTALHRLAPTRFLLGSSLVLDVGQ 134

Query: 134  DLDIQALERYFAANGYVRASTVSERGEFAVRGGVVDVYPPGFEEPVRLDMFGSELESIRT 193
             +D++ +     A+GY    TV E GEFAVRG ++D++P G + P R+D+F +E+E++RT
Sbjct: 135  TIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDNEIETLRT 194

Query: 194  FDPETQRSTGQMTFVSLAPVSEALLDAAAISRFRTGYLNLFGAP-GDDPLYATISEGARR 252
            FDPETQRS  ++  V L P  E  +    ++RF+  +   F        ++  ++ G   
Sbjct: 195  FDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQDLASGIIP 254

Query: 253  QGMEQWLPLFYETLDSLFDYLPDDAAIFLDNQVETARAERWDLVADAYDARAEAAKAKGQ 312
             G+E +LPLF+E   +LFDYLP D  +F    VE A    W+ V   Y+ R      +G 
Sbjct: 255  AGIEYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHFWNDVRGRYEDR------RGD 308

Query: 313  ASANRALPPKRLYLDAGDWNQALAGRVVRRFTPFSTGGEDAGGRLGRTFAAERAQDSVNL 372
             S    LPP  L+L   D    L     +++       E+    +GR     RA  ++ +
Sbjct: 309  LS-RPLLPPAELFLPVEDCFARL-----KQWPRVVVSSEELEPGVGRERFPARALPNLAI 362

Query: 373  F----EAVAAHAAALKADGKRVLFASWTEGSSERLATMLADHGLDHIVAVRDWADVQAAP 428
                 + +A  A  L     RVLF + + G  E L  +L    L     V  W D     
Sbjct: 363  EAKANQPLAELANFLDQFPGRVLFTAESAGRREVLLELLERLKL-RPHTVEGWDDFITGA 421

Query: 429  KDLYLRGVLPVEHGFVTD--AVAVISETDILGDRLARPRKKRRASNFLAEA-----SALT 481
            + L +  + P++ G + D   +A+I+E+ + G R+ + R++ +      +A     + L 
Sbjct: 422  ERLAIT-IAPLDDGLLLDDPGLALIAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELR 480

Query: 482  TGDLVVHLDHGIGRYEGLKTLEIQQAPHDCLELFYAGESKLYLPVENIDLLTRY-GSDSE 540
             G  VVH+DHG+GRY GL TLEI     + L L YA  +KLY+PV N+ L+ RY GSD  
Sbjct: 481  EGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA 540

Query: 541  GVQLDKLGGAGWQARKAKAKERLRAMAEGLIALAAKRALRETDAVTPPPGLFAEFCARFP 600
               L +LG   WQ  K KA E++R +A  L+ + A+RA R+  A   P   +A F A FP
Sbjct: 541  LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFP 600

Query: 601  YEETDDQLNAIGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIVAPT 660
            +EET DQ  AI  V  D+    PMDRL+CGDVGFGKTEVA+RAAF+   +G+QVA++ PT
Sbjct: 601  FEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT 660

Query: 661  TLLARQHYKTFTERFAGWPVKVRQLSRMVGSKEATETRAGLKDGSVEIVVGTHAVLSEQV 720
            TLLA+QHY +F +RFA WPV V  +SR   +KE     A L +G ++I++GTH +L + V
Sbjct: 661  TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDV 720

Query: 721  GFRDLGLVIVDEEQHFGVKHKEKLKTLRADVHLLTLTATPIPRTLQMALSGIREMSIIAT 780
             F+DLGL I+DEE  FGV+ KE+LK LR++V +LTLTATPIPRTL MA++G+R++SIIAT
Sbjct: 721  RFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIAT 780

Query: 781  PPVDRLAVRTYVTPWDPVLVREALLREKYRGGQAYYVAPRLKDLPAIEKFLREQVPEVKF 840
            PP  RL+VRT+V   +   V+EALLRE  RGGQ YY+   +K +      L E VPE + 
Sbjct: 781  PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI 840

Query: 841  VVGHGQMSATQLEEVMSAFYDGEYDVLVSTTIVESGLDIPTANTLIVHRADMFGLAQLYQ 900
             +GHGQM   +LE+VMS FY   ++VLV++TI+E+G+D+P+ANT+++ RAD FGLAQL+Q
Sbjct: 841  GIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQ 900

Query: 901  IRGRVGRSKARAFAYLTTDAVKPMTLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNL 960
            +RGRVGRS  +A+AYL T   + ++  AE+RL+ + +  +LGAGF LA++DL+ RG G L
Sbjct: 901  LRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL 960

Query: 961  LGDEQSGHIREVGVELYQQMLEDAVAELREKGEGQAVDR--GWSPSINVGASVLIPEDYV 1018
            LG+ QSG I+ VG  LY +MLE AV  +R KG    +++  G  P IN+    LIPEDY+
Sbjct: 961  LGEGQSGQIQAVGFTLYMEMLERAVKAIR-KGTQPNLEQPLGGGPEINLRLPALIPEDYL 1019

Query: 1019 PDLNVRLSLYRRLSDAEQAEDREALAAELIDRFGPLPDEAQQLLKIVGIKSNCRKACIEK 1078
            PD++ RL LY+R++ A   E  + L  E+IDRFG LP+  + L+++  +K +  K  I+K
Sbjct: 1020 PDVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKK 1079

Query: 1079 IDIGPRGAVLTLRDNSFPNPAGLVGLIQ 1106
            +D GP G  L     +  +P  L+ LIQ
Sbjct: 1080 VDAGPNGGKLEFEAETPVDPLTLIKLIQ 1107