Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Brevundimonas sp. GW460-12-10-14-LB2

Subject, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  749 bits (1933), Expect = 0.0
 Identities = 444/1107 (40%), Positives = 649/1107 (58%), Gaps = 35/1107 (3%)

Query: 22   ALIVAERIKAGGGVGLFVARDFQRSGSFVQAFQFFSKDIEVLDYPAWDCLPYDRLSPTAG 81
            A +VAE  +   G  + +A D Q +       + F+ D  V++   W+ LPYD  SP   
Sbjct: 28   ATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT-DQMVMNLADWETLPYDSFSPHQE 86

Query: 82   IAAQRMATLTRLAMRKPGDAPVLVVTTVSAAMQRTPPKSVTTQAGFETKVGRDLDIQALE 141
            I + R++TL +L   + G    +++  V+  MQR  P S         K G+ L   AL 
Sbjct: 87   IISSRLSTLYQLPSMQRG----VLIVPVNTLMQRVCPHSYLHGHALVMKKGQRLSRDALR 142

Query: 142  RYFAANGYVRASTVSERGEFAVRGGVVDVYPPGFEEPVRLDMFGSELESIRTFDPETQRS 201
                + GY     V E GE+A RG ++D++P G E+P RLD F  E++S+R FD +TQR+
Sbjct: 143  AQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDDEIDSLRLFDADTQRT 202

Query: 202  TGQMTFVSLAPVSEALLDAAAISRFRTGYLNLFGAPGD-DPLYATISEGARRQGMEQWLP 260
              ++  ++L P  E   D AAI  FR+ + + F    D + +Y  +S+G    G+E W P
Sbjct: 203  LEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDAEHIYQQVSKGTLPAGIEYWQP 262

Query: 261  LFY-ETLDSLFDYLPDDAAIFLDNQVETARAERWDLVADAYDARAEAAKAKGQASANRAL 319
            LF+ E L  LF Y P +  +     +ET+ AER+   AD   AR E    +G       L
Sbjct: 263  LFFSEPLPPLFSYFPANTLVVNTGSLETS-AERFQ--ADTL-ARFEN---RGVDPMRPLL 315

Query: 320  PPKRLYLDAGDWNQALAG----RVVRRFTPFSTGGEDAGGRLGRTFAAERAQDSVNLFEA 375
            PP+ L+L   +    L      ++     P      + G +     A +  Q +      
Sbjct: 316  PPEALWLRVDELFSELKRWPRLQLKTDHLPEKAANTNLGFQKLPDLAIQAQQKA-----P 370

Query: 376  VAAHAAALKADGKRVLFASWTEGSSERLATMLADHGLDHIVAVRDWADVQAAPKDLYLRG 435
            + A    L++    V+F+  +EG  E L  +LA   +     +R   + Q A + L +  
Sbjct: 371  LDALRKFLESFSGPVIFSVESEGRREALGELLARIKIAPKRILR-LDEAQDAGRYLMIGA 429

Query: 436  VLPVEHGFVTDA--VAVISETDILGDRLARPR-KKRRASN---FLAEASALTTGDLVVHL 489
                EHGF+     +A+I E+D+LG+R+AR R   RR  N    +   + L  G  VVHL
Sbjct: 430  A---EHGFIDTQRNLALICESDLLGERVARRRLDSRRTINPDTLIRNLAELHVGQPVVHL 486

Query: 490  DHGIGRYEGLKTLEIQQAPHDCLELFYAGESKLYLPVENIDLLTRY-GSDSEGVQLDKLG 548
            +HG+GRY G+ TLE      + L L YA ++KLY+PV ++ L++RY G   E   L KLG
Sbjct: 487  EHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESAPLHKLG 546

Query: 549  GAGWQARKAKAKERLRAMAEGLIALAAKRALRETDAVTPPPGLFAEFCARFPYEETDDQL 608
            G  W   + KA E++R +A  L+ + A+RA +E  A       +  FC  FP+E T DQ 
Sbjct: 547  GDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQA 606

Query: 609  NAIGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIVAPTTLLARQHY 668
             AI  VL D+ +   MDRL+CGDVGFGKTEVA+RAAF+     +QVA++ PTTLLA+QHY
Sbjct: 607  QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHY 666

Query: 669  KTFTERFAGWPVKVRQLSRMVGSKEATETRAGLKDGSVEIVVGTHAVLSEQVGFRDLGLV 728
              F +RFA WPV++  LSR   +KE T+  A   +G ++I++GTH +L   V  RDLGL+
Sbjct: 667  DNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLL 726

Query: 729  IVDEEQHFGVKHKEKLKTLRADVHLLTLTATPIPRTLQMALSGIREMSIIATPPVDRLAV 788
            IVDEE  FGV+HKE++K +RADV +LTLTATPIPRTL MA+SG+R++SIIATPP  RLAV
Sbjct: 727  IVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786

Query: 789  RTYVTPWDPVLVREALLREKYRGGQAYYVAPRLKDLPAIEKFLREQVPEVKFVVGHGQMS 848
            +T+V  +D ++VREA+LRE  RGGQ YY+   ++++    + L E VPE +  +GHGQM 
Sbjct: 787  KTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846

Query: 849  ATQLEEVMSAFYDGEYDVLVSTTIVESGLDIPTANTLIVHRADMFGLAQLYQIRGRVGRS 908
              +LE VM+ F+   ++VLV TTI+E+G+DIPTANT+I+ RAD FGLAQL+Q+RGRVGRS
Sbjct: 847  ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906

Query: 909  KARAFAYLTTDAVKPMTLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNLLGDEQSGH 968
              +A+A+L T   K MT  A++RL+ + SL++LGAGF LA+HDL+ RG G LLG+EQSG 
Sbjct: 907  HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966

Query: 969  IREVGVELYQQMLEDAVAELREKGEGQAVD-RGWSPSINVGASVLIPEDYVPDLNVRLSL 1027
            +  +G  LY ++LE+AV  L+   E    D       + +    L+P+D++PD+N RLS 
Sbjct: 967  METIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSF 1026

Query: 1028 YRRLSDAEQAEDREALAAELIDRFGPLPDEAQQLLKIVGIKSNCRKACIEKIDIGPRGAV 1087
            Y+R++ A+   + E +  ELIDRFG LPD A+ LL I  ++   +K  I K++   +G  
Sbjct: 1027 YKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGGT 1086

Query: 1088 LTLRDNSFPNPAGLVGLIQKNHAFWKI 1114
            +   + +  +PA L+GL+QK    +++
Sbjct: 1087 IEFAEKNHVDPAWLIGLLQKQPQHFRL 1113