Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Brevundimonas sp. GW460-12-10-14-LB2

Subject, 1164 a.a., transcription-repair coupling factor from Escherichia coli ECRC99

 Score =  751 bits (1938), Expect = 0.0
 Identities = 449/1134 (39%), Positives = 658/1134 (58%), Gaps = 31/1134 (2%)

Query: 22   ALIVAERIKAGGGVGLFVARDFQRSGSFVQAFQFFSKDIEVLDYPAWDCLPYDRLSPTAG 81
            A +VAE  +   G  + +A D Q +         F+ D  V++   W+ LPYD  SP   
Sbjct: 44   ATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT-DQMVMNLADWETLPYDSFSPHQD 102

Query: 82   IAAQRMATLTRLAMRKPGDAPVLVVTTVSAAMQRTPPKSVTTQAGFETKVGRDLDIQALE 141
            I + R++TL +L   + G    +++  V+  MQR  P S         + G+ L   AL 
Sbjct: 103  IISSRLSTLYQLPTMQRG----VLIVPVNTLMQRVCPHSFLHGHALVMEKGQRLSRDALR 158

Query: 142  RYFAANGYVRASTVSERGEFAVRGGVVDVYPPGFEEPVRLDMFGSELESIRTFDPETQRS 201
                + GY     V E GE+A RG ++D++P G E P RLD F  E++S+R FD ++QR+
Sbjct: 159  TQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRT 218

Query: 202  TGQMTFVSLAPVSEALLDAAAISRFRTGYLNLFGAPGD-DPLYATISEGARRQGMEQWLP 260
              ++  ++L P  E   D AAI  FR+ + + F    D + +Y  +S+G    G+E W P
Sbjct: 219  LEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQP 278

Query: 261  LFY-ETLDSLFDYLPDDAAIFLDNQVETARAERWDLVADAYDARAEAAKAKGQASANRAL 319
            LF+ E L  LF Y P +  +     +E + AER+   AD   AR E    +G       L
Sbjct: 279  LFFSEPLPPLFSYFPANTLLVNTGDLENS-AERFQ--ADTL-ARFEN---RGVDPMRPLL 331

Query: 320  PPKRLYLDAGDWNQALAG--RVVRRFTPFSTGGEDAGGRLGRTFAAERAQDSVNLFEAVA 377
            PP+ L+L   +    L    RV  +     T  + A   LG     + A  +       A
Sbjct: 332  PPQSLWLRVDELFSELKNWPRVQLKTEHLPT--KAANANLGFQKLPDLAVQAQQKAPLDA 389

Query: 378  AHAAALKADGKRVLFASWTEGSSERLATMLADHGLDHIVAVRDWADVQAAPKDLYLRGVL 437
                    DG  V+F+  +EG  E L  +LA      I   R     +A+ +  YL  + 
Sbjct: 390  LRKFLESFDGP-VVFSVESEGRREALGELLARI---KIAPQRIMRLDEASDRGRYLM-IG 444

Query: 438  PVEHGFVTDA--VAVISETDILGDRLARPRKKRRAS----NFLAEASALTTGDLVVHLDH 491
              EHGFV     +A+I E+D+LG+R+AR R+  R +      +   + L  G  VVHL+H
Sbjct: 445  AAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEH 504

Query: 492  GIGRYEGLKTLEIQQAPHDCLELFYAGESKLYLPVENIDLLTRY-GSDSEGVQLDKLGGA 550
            G+GRY G+ TLE      + L L YA ++KLY+PV ++ L++RY G   E   L KLGG 
Sbjct: 505  GVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGD 564

Query: 551  GWQARKAKAKERLRAMAEGLIALAAKRALRETDAVTPPPGLFAEFCARFPYEETDDQLNA 610
             W   + KA E++R +A  L+ + A+RA +E  A       +  FC  FP+E T DQ  A
Sbjct: 565  AWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQA 624

Query: 611  IGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIVAPTTLLARQHYKT 670
            I  VL D+ +   MDRL+CGDVGFGKTEVA+RAAF+     +QVA++ PTTLLA+QHY  
Sbjct: 625  INAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDN 684

Query: 671  FTERFAGWPVKVRQLSRMVGSKEATETRAGLKDGSVEIVVGTHAVLSEQVGFRDLGLVIV 730
            F +RFA WPV++  LSR   +KE T+  A + +G ++I++GTH +L   V F+DLGL+IV
Sbjct: 685  FRDRFANWPVRIEMLSRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 744

Query: 731  DEEQHFGVKHKEKLKTLRADVHLLTLTATPIPRTLQMALSGIREMSIIATPPVDRLAVRT 790
            DEE  FGV+HKE++K +RA+V +LTLTATPIPRTL MA+SG+R++SIIATPP  RLAV+T
Sbjct: 745  DEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 804

Query: 791  YVTPWDPVLVREALLREKYRGGQAYYVAPRLKDLPAIEKFLREQVPEVKFVVGHGQMSAT 850
            +V  +D ++VREA+LRE  RGGQ YY+   ++++    + L E VPE +  +GHGQM   
Sbjct: 805  FVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRER 864

Query: 851  QLEEVMSAFYDGEYDVLVSTTIVESGLDIPTANTLIVHRADMFGLAQLYQIRGRVGRSKA 910
            +LE VM+ F+   ++VLV TTI+E+G+DIPTANT+I+ RAD FGLAQL+Q+RGRVGRS  
Sbjct: 865  ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 924

Query: 911  RAFAYLTTDAVKPMTLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNLLGDEQSGHIR 970
            +A+A+L T   K MT  A++RL+ + SL++LGAGF LA+HDL+ RG G LLG+EQSG + 
Sbjct: 925  QAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSME 984

Query: 971  EVGVELYQQMLEDAVAELREKGEGQAVD-RGWSPSINVGASVLIPEDYVPDLNVRLSLYR 1029
             +G  LY ++LE+AV  L+   E    D       + +    L+P+D++PD+N RLS Y+
Sbjct: 985  TIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYK 1044

Query: 1030 RLSDAEQAEDREALAAELIDRFGPLPDEAQQLLKIVGIKSNCRKACIEKIDIGPRGAVLT 1089
            R++ A+   + E +  ELIDRFG LPD A+ LL I  ++   +K  I K++   +G V+ 
Sbjct: 1045 RIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE 1104

Query: 1090 LRDNSFPNPAGLVGLIQKNHAFWKIRPDQKIVVSGDWPTAEERLKVAERITADL 1143
              + +  NPA L+GL+QK    +++    ++    D    + R++   +   +L
Sbjct: 1105 FAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1158