Pairwise Alignments

Query, 311 a.a., D-allose ABC transporter periplasmic binding protein from Escherichia coli BL21

Subject, 295 a.a., ribose ABC transporter substrate-binding protein RbsB from Serratia liquefaciens MT49

 Score =  149 bits (375), Expect = 1e-40
 Identities = 106/311 (34%), Positives = 164/311 (52%), Gaps = 18/311 (5%)

Query: 1   MNKYLKYFSGTLVGLMLSTSAFAAAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIF 60
           M K     S   +   LS +A A    A+V+ TL+NPF+V MK+G + EA  LG ++ + 
Sbjct: 3   MKKLAILASAFALSATLSANALAKDTIALVVSTLNNPFFVSMKEGAQQEANKLGYNLVVL 62

Query: 61  ASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMD 120
              S+ +   +L   +DL  +  K +   P  S  +   +  A +  I ++ LD      
Sbjct: 63  --DSQNNPAKELANVQDLMVQAPKLLLINPTDSDAVGNAIKMANQAKIPVITLDRVASK- 119

Query: 121 NLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATE 180
                 G+V + + +DN   G     FI  K+GA+  +V  +EG AG ++   R  G  +
Sbjct: 120 ------GDVVSHIASDNRVGGKMAGDFIAKKVGADA-KVIQLEGIAGTSAARERGEGFKQ 172

Query: 181 AFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGK 240
           +  + ++ KL+ASQPAD+DR K L+V  N+L  +P+++A++  ND MA+G  +A+  AGK
Sbjct: 173 SLDQ-NKFKLLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK 231

Query: 241 TGKVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKVIPLDKAPE 300
           T  V+VVG DG  +  K VE G++ ATVAQ P  IG  G+      E + KV+  +K   
Sbjct: 232 T-DVVVVGFDGTADGVKAVEGGKLAATVAQRPDQIGVIGV------ETADKVLKGEKVSA 284

Query: 301 FKLVDSILVTQ 311
              VD  LVTQ
Sbjct: 285 TIPVDLKLVTQ 295