Pairwise Alignments

Query, 940 a.a., ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC from Escherichia coli BL21

Subject, 944 a.a., excinuclease ABC subunit A from Pseudomonas simiae WCS417

 Score = 1463 bits (3787), Expect = 0.0
 Identities = 715/940 (76%), Positives = 828/940 (88%), Gaps = 1/940 (0%)

Query: 1   MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MDKI +RGARTHNLKNI+L +PRDKLIV+TGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC 120
           ARQFLS+MEKPDVD IEGLSPAISIEQKSTSHNPRSTVGTITEI+DYLRLL+ARVG PRC
Sbjct: 61  ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIPRC 120

Query: 121 PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARID 180
           PDHD+PL AQTVSQMVD VL+QPEG +LMLLAP+I+ERKGEH    E L +QG++RARI+
Sbjct: 121 PDHDIPLEAQTVSQMVDLVLAQPEGAKLMLLAPVIRERKGEHLSVFEELRAQGFVRARIN 180

Query: 181 GEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDP 240
           G++ +L + PKL+ QKKH+I+VVVDRFKVR DL QRLAESFETAL+L+ G A+VA MDD 
Sbjct: 181 GKLYELDEAPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE 240

Query: 241 KAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPEL 300
             EE++FSA FACPICG+++ ELEP+LFSFNNPAGACPTCDGLGV+Q+FD  R++ N ++
Sbjct: 241 PGEEIIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKRLV-NGDM 299

Query: 301 SLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEFKY 360
           +LA GAIRGWDRRN YYFQML SLA HYKF +E P+  L A+  KV+L+GSG +N++FKY
Sbjct: 300 TLAEGAIRGWDRRNVYYFQMLGSLASHYKFSLEVPFNQLPADQQKVILHGSGSQNVDFKY 359

Query: 361 MNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARH 420
           +NDRGD   R HPFEG++ N+ERRY+ETES++VREELAKF+S +PC  C GTRLRREARH
Sbjct: 360 LNDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFLSTQPCPDCRGTRLRREARH 419

Query: 421 VYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTL 480
           V+V    LPA++++ IG A E+F  LKL G+R +IA+KILKEI +RL+FLVNVGL+YL+L
Sbjct: 420 VWVGEKTLPAVTNLPIGDACEYFGVLKLTGRRGEIADKILKEIRERLQFLVNVGLDYLSL 479

Query: 481 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNT 540
            RSA+TLSGGEAQRIRLASQIGAGLVGV+Y+LDEPSIGLHQRDN+RLLGTL HLRD+GNT
Sbjct: 480 DRSADTLSGGEAQRIRLASQIGAGLVGVLYILDEPSIGLHQRDNDRLLGTLKHLRDIGNT 539

Query: 541 VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEV 600
           VIVVEHDEDAIR AD+V+DIGPGAGVHGG +VAEG    +MA P+SLTG+Y+SG+ KIEV
Sbjct: 540 VIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAEGTPAEVMAHPDSLTGKYLSGRVKIEV 599

Query: 601 PKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR 660
           P KR P N +  L L GARGNNL++V L +P+GL TC+TGVSGSGKSTLIN+TLFP++  
Sbjct: 600 PAKRTPRNKKLALHLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFPLSAT 659

Query: 661 QLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTSVRELFAGVPE 720
            LNGAT  E A +  I+GLEH DKV+DIDQSPIGRTPRSNPATYTG+FT +RELFAGVPE
Sbjct: 660 ALNGATTLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPE 719

Query: 721 SRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY 780
           SR+RGY PGRFSFNV+GGRCEACQGDG+IKVEMHFLPDIYVPCD CK KRYNRETLEIKY
Sbjct: 720 SRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKY 779

Query: 781 KGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKL 840
           KGK+IHE L+MTIEEAR FFDAVPALARKLQTLMDVGL+YI+LGQSATTLSGGEAQRVKL
Sbjct: 780 KGKSIHETLEMTIEEARVFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKL 839

Query: 841 ARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADW 900
           +RELSKR TG+TLYILDEPTTGLHFADIQQLLDVLH+LRD GNT+VVIEHNLDVIKTADW
Sbjct: 840 SRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADW 899

Query: 901 IVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML 940
           +VDLGPEGGS GG+I+  GTPE V+E   SHT  +LKP+L
Sbjct: 900 LVDLGPEGGSKGGQIIAVGTPEQVSEMPQSHTGYYLKPLL 939