Pairwise Alignments
Query, 940 a.a., ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC from Escherichia coli BL21
Subject, 974 a.a., excinuclease ABC subunit UvrA from Rhizobium sp. OAE497
Score = 1137 bits (2940), Expect = 0.0
Identities = 579/959 (60%), Positives = 731/959 (76%), Gaps = 26/959 (2%)
Query: 4 IEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
I +RGAR HNLK I+L +PR+KLIV+TGLSGSGKSSLAFDT+YAEGQRRYVESLSAYARQ
Sbjct: 7 ISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 66
Query: 64 FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDH 123
FL +M+KPDVD I+GLSPAISIEQK+TS NPRSTVGT+TEI+DY+RLLFARVG P P
Sbjct: 67 FLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGVPYSPAT 126
Query: 124 DVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARIDGEV 183
+P+ +QTVSQMVD VL+ EG RL +LAP+++ RKGE+ K L L +G+ R ++DG+
Sbjct: 127 GLPIESQTVSQMVDRVLAFEEGTRLYILAPLVRGRKGEYKKELAELMKKGFQRVKVDGQF 186
Query: 184 CDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDPKA- 242
+++D P L+ + KH I+VVVDR VR D++ RLA+S ET+L+L+ G AV D P
Sbjct: 187 YEIADVPALDKKYKHDIDVVVDRIVVRADMSSRLADSLETSLKLADGLAVAEFADKPLPP 246
Query: 243 -----------------EELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGV 285
E +LFS FACP+ G+++ E+EPRLFSFNNPAGACPTCDGLG
Sbjct: 247 EETAAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPAGACPTCDGLGA 306
Query: 286 QQYFDPDRVIQNPELSLAGGAIRGWDRRNF-YYFQMLKSLADHYKFDVEAPWGSLSANVH 344
QQ D + +I PE +L GAI W + + YY Q L++L H+ F + W LSA
Sbjct: 307 QQKIDANLIIPEPERTLRDGAIAPWAKSSSPYYNQTLEALGKHFGFKLGNRWSDLSAKAQ 366
Query: 345 KVVLYGSGKENIEFKYMNDRGDTSIRRHP-FEGVLHNMERRYKETESSAVREELAKFISN 403
V+L G+ +E IEF Y + G S H FEG++ N+ERR+KET+S+ REE+ +F+S
Sbjct: 367 DVILNGT-EEKIEFHYAD--GARSYTTHKTFEGIITNLERRWKETDSAWAREEIERFMSA 423
Query: 404 RPCASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLK--LAGQRAKIAEKILK 461
PC SC G RL+ EA V ++ + ++ MSI A ++F L ++ +IA +ILK
Sbjct: 424 APCPSCAGYRLKPEALAVKIDKLHIGEVTQMSIRVARDWFEVLPSHFTAKQNEIAVRILK 483
Query: 462 EIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQ 521
EI DRL+FL +VGL YL+LSR++ TLSGGE+QRIRLASQIG+GL GV+YVLDEPSIGLHQ
Sbjct: 484 EIRDRLRFLNDVGLEYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQ 543
Query: 522 RDNERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIM 581
RDN RLL TL HLRD+GNTVIVVEHDEDAI AD V+DIGP AG+HGG+V+A G + IM
Sbjct: 544 RDNARLLDTLKHLRDIGNTVIVVEHDEDAILTADDVVDIGPAAGIHGGQVIAHGTPQDIM 603
Query: 582 AVPESLTGQYMSGKRKIEVPKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGV 641
A P+SLTG+Y+SG+ + VP +R K +K+ GARGNNLK+VT ++P+G+FT +TGV
Sbjct: 604 ANPKSLTGKYLSGELGVPVPDERRKPKKGKEIKVVGARGNNLKNVTASIPLGVFTAVTGV 663
Query: 642 SGSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNP 701
SG GKST + +TL+ A R++ GA PA + I G EH DKVIDIDQSPIGRTPRSNP
Sbjct: 664 SGGGKSTFLIETLYKSAARRVMGAREI-PADHDRIDGFEHIDKVIDIDQSPIGRTPRSNP 722
Query: 702 ATYTGVFTSVRELFAGVPESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYV 761
ATYTG FT +R+ FAG+PE++ARGY PGRFSFNV+GGRCEACQGDGVIK+EMHFLPD+YV
Sbjct: 723 ATYTGAFTPIRDWFAGLPEAKARGYQPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYV 782
Query: 762 PCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYI 821
CD C GKRYNRETL++ +KGK+I +VLDMT+EE EFF AVPA+ KLQ+L DVGL YI
Sbjct: 783 TCDVCHGKRYNRETLDVTFKGKSISDVLDMTVEEGVEFFAAVPAVRDKLQSLFDVGLGYI 842
Query: 822 RLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQ 881
++GQ A TLSGGEAQRVKLA+ELSKR TG+TLYILDEPTTGLHF D+ +LL++LH+L +Q
Sbjct: 843 KVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDVAKLLEMLHELVNQ 902
Query: 882 GNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML 940
GN++VVIEHNL+VIKTADW++D GPEGG GGGEI+ +GTPE + + + S+T +FLK +L
Sbjct: 903 GNSVVVIEHNLEVIKTADWVLDFGPEGGDGGGEIVATGTPEAIVKEKRSYTGQFLKELL 961
Score = 132 bits (331), Expect = 1e-34
Identities = 76/203 (37%), Positives = 111/203 (54%), Gaps = 15/203 (7%)
Query: 406 CASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGD 465
C C G R RE V + + + DM++ +EFF + + D
Sbjct: 784 CDVCHGKRYNRETLDVTFKGKSISDVLDMTVEEGVEFF--------------AAVPAVRD 829
Query: 466 RLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVG-VMYVLDEPSIGLHQRDN 524
+L+ L +VGL Y+ + + A TLSGGEAQR++LA ++ G +Y+LDEP+ GLH D
Sbjct: 830 KLQSLFDVGLGYIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDV 889
Query: 525 ERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVP 584
+LL L L + GN+V+V+EH+ + I+ AD V+D GP G GGE+VA G EAI+
Sbjct: 890 AKLLEMLHELVNQGNSVVVIEHNLEVIKTADWVLDFGPEGGDGGGEIVATGTPEAIVKEK 949
Query: 585 ESLTGQYMSGKRKIEVPKKRVPA 607
S TGQ++ + KK V A
Sbjct: 950 RSYTGQFLKELLERRPVKKTVAA 972
Score = 68.9 bits (167), Expect = 1e-15
Identities = 45/123 (36%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 611 KVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIA-- 668
K + + GAR +NLK + L LP +TG+SGSGKS+L DT++ QR+ + A
Sbjct: 5 KTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYA 64
Query: 669 ----EPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTSVRELFA--GVPESR 722
E D+ ++ I I+Q R PRS T T ++ +R LFA GVP S
Sbjct: 65 RQFLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGVPYSP 124
Query: 723 ARG 725
A G
Sbjct: 125 ATG 127
Score = 60.1 bits (144), Expect = 7e-13
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 3 KIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
+I+V GAR +NLKN+ IP VTG+SG GKS+ +TLY RR + + A
Sbjct: 634 EIKVVGARGNNLKNVTASIPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPA- 692
Query: 63 QFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPR 119
+ +D E + I I+Q PRS T T +R FA + E +
Sbjct: 693 ------DHDRIDGFEHIDKVIDIDQSPIGRTPRSNPATYTGAFTPIRDWFAGLPEAK 743