Pairwise Alignments

Query, 940 a.a., ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC from Escherichia coli BL21

Subject, 944 a.a., excinuclease (uvrABC system protein A) from Pseudomonas putida KT2440

 Score = 1454 bits (3763), Expect = 0.0
 Identities = 706/940 (75%), Positives = 825/940 (87%), Gaps = 1/940 (0%)

Query: 1   MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MDKI +RGARTHNLKNI+L +PRDKLIV+TGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC 120
           ARQFLS+MEKPDVD IEGLSPAISIEQKSTSHNPRSTVGTITEI+DYLRLL+ARVG PRC
Sbjct: 61  ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRC 120

Query: 121 PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARID 180
           PDHD+PL AQT+SQMVD VL +PEG +LMLLAP+++ERKGEH    + L +QG++RAR++
Sbjct: 121 PDHDIPLEAQTISQMVDLVLERPEGSKLMLLAPVVRERKGEHLAVFDELRAQGFVRARVN 180

Query: 181 GEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDP 240
           G++ +L + PKL+ QKKH+I+VVVDRFKVR DL QRLAESFETAL+L+ G A+VA MDD 
Sbjct: 181 GKLYELDELPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE 240

Query: 241 KAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPEL 300
           + EE +FSA FACP+CG+++ ELEP+LFSFNNPAGACPTCDGLGV+Q+FD  R++ N EL
Sbjct: 241 QGEETIFSARFACPVCGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDTKRLV-NTEL 299

Query: 301 SLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEFKY 360
           +LA GAIRGWDRRN YYFQML SLA HY F +E P+G LSA   KV+L GSGK++++FKY
Sbjct: 300 TLAEGAIRGWDRRNVYYFQMLGSLAAHYGFSLEEPFGELSAEHQKVILQGSGKQSVDFKY 359

Query: 361 MNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARH 420
           +NDRGD   R HPFEG++ N+ERRY+ETES+ VREELAKF+  +PC  C GTRLRREARH
Sbjct: 360 LNDRGDIVKRSHPFEGIVPNLERRYRETESATVREELAKFLGTQPCPDCRGTRLRREARH 419

Query: 421 VYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTL 480
           V+V    LPA++++ IG A  +F  L L G+R +IA KILKEI +RL+FLVNVGL+YLTL
Sbjct: 420 VWVGEKTLPAVTNLPIGEASNYFGQLTLTGRRGEIAAKILKEICERLQFLVNVGLDYLTL 479

Query: 481 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNT 540
            RSA+TLSGGEAQRIRLASQIGAGLVGVMY+LDEPSIGLHQRDN+RLL TL HLRDLGNT
Sbjct: 480 DRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLATLNHLRDLGNT 539

Query: 541 VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEV 600
           VIVVEHDEDAIR AD+V+DIGPGAGVHGG++VAEG  + +M  P+SLTG+Y+SG++KI V
Sbjct: 540 VIVVEHDEDAIRLADYVVDIGPGAGVHGGQIVAEGSPQEVMDHPDSLTGKYLSGRKKIVV 599

Query: 601 PKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR 660
           P KR P N +  LKL GARGNNL++V L +P+GL TC+TGVSGSGKSTLIN+TL+P+A  
Sbjct: 600 PAKRTPRNKKLQLKLKGARGNNLQNVDLEVPIGLLTCVTGVSGSGKSTLINNTLYPLAAT 659

Query: 661 QLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTSVRELFAGVPE 720
            LNGA+  E AP+  + GL+H DKV+DIDQSPIGRTPRSNPATYTG+FT +RELF+GVPE
Sbjct: 660 ALNGASSLEAAPHSSMDGLQHLDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFSGVPE 719

Query: 721 SRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY 780
           SR+RGY PGRFSFNV+GGRCEACQGDG+IKVEMHFLPDIYVPCD CK KRYNRETLEIKY
Sbjct: 720 SRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKY 779

Query: 781 KGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKL 840
           KGK IHEVL+MTIE+AREFFDAVPALARKLQTLMDVGL+YI+LGQSATTLSGGEAQRVKL
Sbjct: 780 KGKNIHEVLEMTIEDAREFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKL 839

Query: 841 ARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADW 900
           +RELSKR TG+TLYILDEPTTGLHFADIQQLLDVLH+LRD GNT+VVIEHNLDVIKTADW
Sbjct: 840 SRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADW 899

Query: 901 IVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML 940
           +VDLGPEGGS GG+I+  GTPE ++E + S+T  +LKP+L
Sbjct: 900 LVDLGPEGGSKGGQIIACGTPEELSEMKQSYTGHYLKPLL 939