Pairwise Alignments

Query, 940 a.a., ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC from Escherichia coli BL21

Subject, 942 a.a., UvrABC system protein A from Methylophilus sp. DMC18

 Score = 1311 bits (3392), Expect = 0.0
 Identities = 637/940 (67%), Positives = 779/940 (82%), Gaps = 3/940 (0%)

Query: 1   MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           M+ I++RGARTHNLKNINL IPR++L+VVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MEFIKIRGARTHNLKNINLDIPRNQLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC 120
           ARQFL+ M+KPDVD IEGLSPAISIEQKSTSHNPRSTVGT+TEIHDYLRLL+AR G+P C
Sbjct: 61  ARQFLARMDKPDVDLIEGLSPAISIEQKSTSHNPRSTVGTVTEIHDYLRLLYARAGDPEC 120

Query: 121 PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARID 180
           P+H + L AQTVSQMVD+VL  PE  +LM+LAP++  RKGE     + L +QG++R RID
Sbjct: 121 PEHGIKLEAQTVSQMVDSVLKLPEDTKLMILAPVVSNRKGEQLDLFDTLKAQGFVRLRID 180

Query: 181 GEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDP 240
           G++ ++   P+L    KH+++VVVDR KVR+D+ QR+AESFETAL L+ G AV  +MD  
Sbjct: 181 GKIYEMDSLPQLAKTTKHSVDVVVDRLKVREDIKQRIAESFETALRLADGKAVALEMDSE 240

Query: 241 KAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPEL 300
           K  E LFSA F+CP+C YS+ ELEPRLFSFNNP GACP CDGLG   +FDP RV+  P L
Sbjct: 241 K--EHLFSAKFSCPVCDYSLAELEPRLFSFNNPMGACPKCDGLGQVTFFDPKRVVAFPHL 298

Query: 301 SLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEFKY 360
           SLA GAI+GWD+RN +YFQML SL+ HY FD+EAP+ +L     +++LYGSG+E I FKY
Sbjct: 299 SLASGAIKGWDKRNQFYFQMLASLSQHYDFDLEAPFETLPEETQQILLYGSGREQIAFKY 358

Query: 361 MNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARH 420
           +N+RG    + H FEG+++N++RRY+E++S+AVR+ELAK+I+   C  C GTRLR+EARH
Sbjct: 359 LNERGTFFSKSHTFEGIINNLQRRYRESDSTAVRDELAKYINATACPDCGGTRLRKEARH 418

Query: 421 VYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTL 480
           V V +  +  I ++ +  A+ FF  L+L+GQ+  IA+KI+KEI  RLKFL NVGL+YL+L
Sbjct: 419 VKVGDRNIHQICEVPLKQALNFFETLQLSGQKLAIADKIVKEIESRLKFLTNVGLDYLSL 478

Query: 481 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNT 540
           SRSAETLSGGEAQRIRLASQIG+GL GVMYVLDEPSIGLHQRDN+RLL TL  LRD+GN+
Sbjct: 479 SRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLETLKRLRDIGNS 538

Query: 541 VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEV 600
           VIVVEHD+DAI+ AD ++DIGPGAG HGG +V+ G    I A P SLTGQY+SGK++I  
Sbjct: 539 VIVVEHDQDAIQLADFIVDIGPGAGEHGGNIVSFGTPAQIEADPNSLTGQYISGKKQITF 598

Query: 601 PKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR 660
              R   +P++++KL GA GNNLKDV++ +PVGL TC+TGVSGSGKSTLINDTL+ +   
Sbjct: 599 KLPRTQPDPKRMIKLNGASGNNLKDVSIEIPVGLLTCVTGVSGSGKSTLINDTLYRVVAA 658

Query: 661 QLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTSVRELFAGVPE 720
            L G++  EPA ++ I+GLE FDKV+D+DQSPIGRTPRSNPATYTG+FT +R+LFA VPE
Sbjct: 659 HLYGSS-TEPAAHQSIEGLEFFDKVVDVDQSPIGRTPRSNPATYTGLFTPIRDLFASVPE 717

Query: 721 SRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY 780
           SRARGY PGR+SFNV+GGRCEACQGDGVI+VEMHFLPD+YVPCD CKG+RYNRETLEI++
Sbjct: 718 SRARGYGPGRYSFNVKGGRCEACQGDGVIRVEMHFLPDVYVPCDVCKGQRYNRETLEIQF 777

Query: 781 KGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKL 840
           KGK IHEVL MT+E+A +FF+A P + RKL+TL+DVGL YI LGQSATTLSGGEAQRVKL
Sbjct: 778 KGKNIHEVLAMTVEQAHQFFNAQPVIERKLKTLLDVGLGYITLGQSATTLSGGEAQRVKL 837

Query: 841 ARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADW 900
           A ELSKR TG+TLYILDEPTTGLHFADIQ LLDV+H+LRD GNT+V+IEHNLDVIKTADW
Sbjct: 838 ALELSKRDTGRTLYILDEPTTGLHFADIQLLLDVIHRLRDAGNTVVIIEHNLDVIKTADW 897

Query: 901 IVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML 940
           ++D+GPEGG GGG ++  GTPET+AE  AS+T R+L P+L
Sbjct: 898 LIDMGPEGGDGGGVVVGVGTPETLAENSASYTGRYLIPLL 937