Pairwise Alignments

Query, 940 a.a., ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC from Escherichia coli BL21

Subject, 941 a.a., excinuclease ABC, A subunit from Kangiella aquimarina DSM 16071

 Score = 1443 bits (3735), Expect = 0.0
 Identities = 700/941 (74%), Positives = 817/941 (86%), Gaps = 2/941 (0%)

Query: 1   MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MD I++RGA+THNLKNI+LV+PRDKLIV+TGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MDNIDIRGAKTHNLKNIDLVLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC 120
           ARQFLSLMEKPDV+HIEGLSPAISIEQKSTSHNPRSTVGTITEI+DYLRLLFARVG P C
Sbjct: 61  ARQFLSLMEKPDVEHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGTPHC 120

Query: 121 PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARID 180
           P H +PL AQT+SQMVD+VL QPEG +L+LLAP+IK RKGEH + L+ L ++G++RARI+
Sbjct: 121 PTHHLPLEAQTISQMVDHVLEQPEGTKLLLLAPVIKNRKGEHIQLLQELQAKGFVRARIN 180

Query: 181 GEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMD-D 239
           GEV DLS+ P +EL KKHTIEV+VDRFKV+ DL QRLAESFETALELS G A VA MD D
Sbjct: 181 GEVYDLSEAPTMELHKKHTIEVIVDRFKVKSDLQQRLAESFETALELSDGIARVAPMDED 240

Query: 240 PKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPE 299
              EE++FSA +ACP CG+S+ ELEPR+FSFNNPAGACPTCDGLG+ Q+FDPD++I N +
Sbjct: 241 SDLEEMVFSAKYACPTCGHSISELEPRIFSFNNPAGACPTCDGLGIDQFFDPDKIITNED 300

Query: 300 LSLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEFK 359
           +SLAGGAIRGWDRRN YYF MLKSLA HYKFD+EAPW SLS  +  VVLYGSGK  I+F+
Sbjct: 301 ISLAGGAIRGWDRRNVYYFHMLKSLAKHYKFDIEAPWSSLSKKIQDVVLYGSGKTQIDFE 360

Query: 360 YMNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREAR 419
           Y NDRGD   R+H FEG++ NM+RRY ETES AVREEL K+++ + C +C GTRL  ++R
Sbjct: 361 YSNDRGDKYQRKHRFEGIIPNMQRRYHETESGAVREELQKYMTTQSCKACGGTRLNEDSR 420

Query: 420 HVYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLT 479
           +V+++ T LP ++  SI  A ++F+ L L G+R +IA K+LKEIG+RL FLVNVGL+YLT
Sbjct: 421 NVFIDGTSLPQVTHWSIEQAHDYFSTLNLPGKRGEIASKVLKEIGERLSFLVNVGLDYLT 480

Query: 480 LSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGN 539
           L RSA+TLSGGEAQRIRLASQIGAGLVGVMY+LDEPSIGLHQRDN+RLL TL HLRDLGN
Sbjct: 481 LERSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLQTLTHLRDLGN 540

Query: 540 TVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIE 599
           TVIVVEHDEDAIRAAD ++DIGPGAGVHGGE+VA+G L  I     SLT QY++GK KIE
Sbjct: 541 TVIVVEHDEDAIRAADFIVDIGPGAGVHGGEIVAKGTLADIKKAKGSLTAQYLTGKLKIE 600

Query: 600 VPKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQ 659
           VP+KR P + +K +K+ GA GNNL DV L +PVGL TCITGVSGSGKSTLINDTL+PI  
Sbjct: 601 VPEKRTPVDAKKTIKVLGATGNNLNDVDLEIPVGLLTCITGVSGSGKSTLINDTLYPIVA 660

Query: 660 RQLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTSVRELFAGVP 719
           R +N +++ +P PY++IQGL++ DKV+DIDQSPIGRTPRSNPATYTG+FT +RELFAG  
Sbjct: 661 RDINRSSL-QPKPYKEIQGLDNIDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQ 719

Query: 720 ESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIK 779
           ESR RGY PGRFSFNV+GGRCEACQGDGVIKVEMHFLPD+YV CD CKGKRYNRETLEI 
Sbjct: 720 ESRTRGYKPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVACDVCKGKRYNRETLEIL 779

Query: 780 YKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVK 839
           YKGK I+EVLD+T+E+AREFFDA+PA+ARKLQTL+DVGL+YI LGQ+ATTLSGGEAQRVK
Sbjct: 780 YKGKNINEVLDLTVEDAREFFDAIPAVARKLQTLIDVGLSYITLGQAATTLSGGEAQRVK 839

Query: 840 LARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTAD 899
           L+RELSKR TGQTLYILDEPTTGLHF D+ QLL VLH+LRD GNT+VVIEHNLDVIKTAD
Sbjct: 840 LSRELSKRDTGQTLYILDEPTTGLHFHDVNQLLKVLHRLRDHGNTVVVIEHNLDVIKTAD 899

Query: 900 WIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML 940
           WIVDLGPEGGS GG+I+ +GTPE VA+ + S+T ++LKPML
Sbjct: 900 WIVDLGPEGGSKGGQIIATGTPEDVAKIKKSYTGKYLKPML 940