Pairwise Alignments

Query, 940 a.a., ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC from Escherichia coli BL21

Subject, 942 a.a., excinuclease ABC subunit UvrA from Erwinia amylovora T8

 Score = 1731 bits (4482), Expect = 0.0
 Identities = 857/940 (91%), Positives = 901/940 (95%)

Query: 1   MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MD IEVRGARTHNLKNINL+IPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MDNIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC 120
           ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC
Sbjct: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC 120

Query: 121 PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARID 180
           PDHDV LAAQTVSQMVDNVLSQPEG+RLMLLAPI+K+RKGEH+KTLENLASQGYIRARID
Sbjct: 121 PDHDVTLAAQTVSQMVDNVLSQPEGRRLMLLAPIVKDRKGEHSKTLENLASQGYIRARID 180

Query: 181 GEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDP 240
           GEVCDLSDPPKLEL KKHTIEVVVDRFKVRDDLTQRLAESFETALELSGG+AVVADMDD 
Sbjct: 181 GEVCDLSDPPKLELHKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGSAVVADMDDS 240

Query: 241 KAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPEL 300
             EELLFSANFACPICGYSM ELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRV+QNPEL
Sbjct: 241 SVEELLFSANFACPICGYSMNELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVVQNPEL 300

Query: 301 SLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEFKY 360
           SL+GGAIRGWDRRNFYYFQML+SLA+H KFD+EAP+ SL     KV+LYGSGKENIEFKY
Sbjct: 301 SLSGGAIRGWDRRNFYYFQMLRSLAEHLKFDIEAPFNSLDDRSRKVILYGSGKENIEFKY 360

Query: 361 MNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARH 420
           +NDRGDTS+RRHPFEGVLHNMERRYKETESSAVREELAK+ISNR C SC GTRLRREARH
Sbjct: 361 VNDRGDTSVRRHPFEGVLHNMERRYKETESSAVREELAKYISNRSCVSCHGTRLRREARH 420

Query: 421 VYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTL 480
           V+VENT LP ISDMSIGHAMEFF N+KL+GQRAKIAEK+LKEIGDRLKFLVNVGLNYL++
Sbjct: 421 VFVENTTLPTISDMSIGHAMEFFQNMKLSGQRAKIAEKVLKEIGDRLKFLVNVGLNYLSM 480

Query: 481 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNT 540
           SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLL TL+HLR+LGNT
Sbjct: 481 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLVHLRNLGNT 540

Query: 541 VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEV 600
           VIVVEHDEDAIRAADHVIDIGPGAGVHGG+VVAEG ++ IMAV  SLTGQ++SGKR I +
Sbjct: 541 VIVVEHDEDAIRAADHVIDIGPGAGVHGGQVVAEGTVDDIMAVEASLTGQFLSGKRGIAI 600

Query: 601 PKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR 660
           P++RV  NP KV+KLTGA GNNLK+VTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR
Sbjct: 601 PEQRVKGNPAKVMKLTGASGNNLKEVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR 660

Query: 661 QLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTSVRELFAGVPE 720
           QLNGATIAE APYR + G+EHFDKVIDIDQSPIGRTPRSNPATYTG+FT VRELFAGVPE
Sbjct: 661 QLNGATIAEAAPYRTVTGMEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPVRELFAGVPE 720

Query: 721 SRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY 780
           SR RGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLE+KY
Sbjct: 721 SRTRGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEVKY 780

Query: 781 KGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKL 840
           KGK IHEVL+MTIEEAREFFDAVPALARKLQTL+DVGL+YIRLGQSATTLSGGEAQRVKL
Sbjct: 781 KGKNIHEVLEMTIEEAREFFDAVPALARKLQTLIDVGLSYIRLGQSATTLSGGEAQRVKL 840

Query: 841 ARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADW 900
           ARELSKRGTGQTLYILDEPTTGLHFADIQQLL VLH+LRDQGNTIVVIEHNLDVIKTADW
Sbjct: 841 ARELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRDQGNTIVVIEHNLDVIKTADW 900

Query: 901 IVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML 940
           IVDLGPEGGSGGGEILVSGTPETVA+CE SHTARFLKP+L
Sbjct: 901 IVDLGPEGGSGGGEILVSGTPETVAQCERSHTARFLKPLL 940