Pairwise Alignments

Query, 421 a.a., ATP-dependent RNA helicase from Escherichia coli BL21

Subject, 439 a.a., Superfamily II DNA and RNA helicases from Kangiella aquimarina DSM 16071

 Score =  454 bits (1167), Expect = e-132
 Identities = 235/419 (56%), Positives = 295/419 (70%), Gaps = 3/419 (0%)

Query: 1   MSKTHLTEQKFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKT 60
           M  +HL+  +FSD  L PK+++A+   GF  CTPIQA  LPL L G++VAGQAQTGTGKT
Sbjct: 21  MDTSHLSTIRFSDLGLDPKLLKAVADLGFEYCTPIQAKTLPLLLKGQNVAGQAQTGTGKT 80

Query: 61  MAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYG 120
           +AFL    + +L+ P I  R+ N+PR+LIMAPTRELAVQI  DA  L + T LK+ + YG
Sbjct: 81  IAFLLGIMNDILTLPEIEGRRKNEPRSLIMAPTRELAVQIAKDAVQLGKYTDLKIRVVYG 140

Query: 121 GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR 180
           G+ ++KQ + L  GVDILIGTTGRLIDY K     L AI  VVLDEADRM+DLGFIKDIR
Sbjct: 141 GEDHEKQRQQLIDGVDILIGTTGRLIDYYKTKAFGLEAIDSVVLDEADRMFDLGFIKDIR 200

Query: 181 WLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSN 240
           +LF RMPPA  RLNMLFSATLS+RV+ELA+E MNN ++++++ +Q T  +I+E LFYPS 
Sbjct: 201 YLFNRMPPATDRLNMLFSATLSHRVQELAYEHMNNPQHVQIQAQQVTAKKIREALFYPSR 260

Query: 241 EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILD 300
           EE + LL  L+    P++AI+F NTK   E +W  LA +  +  LLTGDV QKKRLR+LD
Sbjct: 261 EEALPLLVGLMSRLQPEKAIVFTNTKRAAEHVWACLAGNDIKAELLTGDVHQKKRLRLLD 320

Query: 301 EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA 360
           E    ++ +LV TDVAARGLHI  +THVFNY LPDD EDYVHRIGRT RAGA G +IS A
Sbjct: 321 ELKNENVSVLVCTDVAARGLHIDGITHVFNYHLPDDAEDYVHRIGRTARAGAEGDAISFA 380

Query: 361 CEEYALNLPAIETYIGHSIPVSKYNPDALMT---DLPKPLRLTRPRTGNGPRRTGAPRN 416
            E++A+NL AIE Y+GH +P  +  P+ L T    LP   +   P    G  +   PRN
Sbjct: 381 GEDFAMNLTAIEEYVGHPLPKLEIKPEYLATLKPSLPIQQKRRHPTQRRGGGKPRHPRN 439