Pairwise Alignments

Query, 321 a.a., D-ribose ABC transporter permease from Escherichia coli BL21

Subject, 340 a.a., ABC transporter permease from Pseudomonas fluorescens SBW25

 Score =  213 bits (541), Expect = 7e-60
 Identities = 137/335 (40%), Positives = 194/335 (57%), Gaps = 34/335 (10%)

Query: 2   TTQTVSGRRYFTKAWLMEQKSLIALLVLIAIVSTL-----SPNFFTINN--LFNILQQTS 54
           T  T S RR  T+       S+  +L+ I +V  L         F +N+  L  ++ Q S
Sbjct: 11  TVPTKSRRRMPTEL------SIFLVLIGIGLVFELFGWIVRDQSFLMNSQRLVLMILQVS 64

Query: 55  VNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGI------------EVNALVAVA 102
           +  ++A+G+T VI+T+GIDLS GS+LAL+  +AAS+               ++   + VA
Sbjct: 65  IIGLLAIGVTQVIITTGIDLSSGSVLALSAMIAASLAQTSDFSRAVFPSLTDLPVWIPVA 124

Query: 103 AALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTENADLFG 162
             L +G   GA+ G I+A   +  FIATL MM+  RG+   YT G PV+      +D + 
Sbjct: 125 MGLGVGLLAGAINGSIIAVTGIPPFIATLGMMVSARGLARYYTEGQPVSM----LSDSYT 180

Query: 163 WFGIGRPLGVPTPVWIMGIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKII 222
             G G       PV I  +V +     L +T+ G+Y YA+GGN  A R SGINV +  II
Sbjct: 181 AIGHGA-----MPVIIFLVVAVIFHIALRYTKYGKYTYAIGGNMQAARTSGINVKRHLII 235

Query: 223 VYSLCGLLASLAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGA 282
           VYS+ GLLA LAG++  AR ++ Q   G  YELDAIAA V+GGTSLAGG GRI GT+IGA
Sbjct: 236 VYSIAGLLAGLAGVVASARAATGQAGMGMSYELDAIAAAVIGGTSLAGGVGRITGTVIGA 295

Query: 283 LILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVD 317
           LILG + +G   +GV +Y Q I+K ++I++AV++D
Sbjct: 296 LILGVMASGFTFVGVDAYIQDIIKGLIIVVAVVID 330