Pairwise Alignments

Query, 321 a.a., D-ribose ABC transporter permease from Escherichia coli BL21

Subject, 326 a.a., ABC transporter, membrane spanning protein (ribose) from Agrobacterium fabrum C58

 Score =  246 bits (628), Expect = 5e-70
 Identities = 150/305 (49%), Positives = 192/305 (62%), Gaps = 11/305 (3%)

Query: 15  AWLMEQKS-LIALLVLIAIVSTLSPNFFTINNLFNILQQTSVNAIMAVGMTLVILTSGID 73
           AWL      L+ LL+L   ++  S NF ++ N  NIL Q +V  IMAVGMT VIL  GID
Sbjct: 18  AWLSGATGPLLGLLMLCVFLTFASENFLSLRNGLNILDQITVLGIMAVGMTFVILLGGID 77

Query: 74  LSVGSLLALTGAV---AASIVGIEVNALVAVAAALALGAAIGAVTGVIVAKGRVQAFIAT 130
           LSVGS+LAL+  +    A++ G+ +   +A+  AL   AA G V G++V   RV AFIAT
Sbjct: 78  LSVGSVLALSMMIMGWTANVAGMPMG--MAIVLALVASAACGLVVGILVTAFRVPAFIAT 135

Query: 131 LVMMLLLRGVTMVYTNGSPVNTGFTENADLFGWFGIGRPLGVPTP-VWIMGIVFLAAWYM 189
           L MM + RG+  + T+G  +  GF    D F    I R  GV T  V +M +V L +W  
Sbjct: 136 LAMMSVARGLANMITDGQQI-VGFP---DWFMMLAIERHFGVLTATVLLMLVVVLVSWAF 191

Query: 190 LHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLASLAGIIEVARLSSAQPTA 249
           L     GR +YA+GGN    RL+GINV  + I VY +C +LA LAGI+  ARL S QP++
Sbjct: 192 LRFRSEGRTVYAVGGNPEVARLAGINVPLVTICVYVVCAVLAGLAGIVLAARLDSVQPSS 251

Query: 250 GTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVV 309
           G GYELD IAAVV+GGTSL+GG G I GTLIG LI+G L NGLNLL VS + Q ++  VV
Sbjct: 252 GFGYELDTIAAVVIGGTSLSGGAGGIGGTLIGVLIIGVLRNGLNLLNVSPFLQQVIIGVV 311

Query: 310 ILLAV 314
           I+LAV
Sbjct: 312 IVLAV 316