Pairwise Alignments

Query, 501 a.a., D-ribose ABC transporter ATPase from Escherichia coli BL21

Subject, 499 a.a., hypothetical protein from Escherichia coli BL21

 Score =  451 bits (1159), Expect = e-131
 Identities = 247/494 (50%), Positives = 333/494 (67%), Gaps = 5/494 (1%)

Query: 2   EALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYARDAGTL 61
           E  LQ+K I K FPGV AL+    ++  G V AL+GENGAGKST+MK+L+G+Y  D G +
Sbjct: 3   ETFLQMKHITKRFPGVLALNDVQFSLRRGEVHALLGENGAGKSTLMKILSGVYQPDEGEI 62

Query: 62  LWLGKETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFV--NRFGKIDWKTMY 119
           ++  K  +F+ P S+Q  GI IIHQE NL P+LT+ ENIF+GREF   NR+ ++D K   
Sbjct: 63  IFEDKPVSFSDPLSAQNVGITIIHQEFNLFPELTVEENIFIGREFCKKNRW-RLDEKQQR 121

Query: 120 AEADKLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETES 179
               ++L KLNL  K D LV DL++  QQMVEIAK +S  ++++IMDEPT ALT+TE ES
Sbjct: 122 QATIEILQKLNLAIKPDTLVADLTVAQQQMVEIAKAISVNARILIMDEPTAALTETEIES 181

Query: 180 LFRVIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVG 239
           LFRV R LK QG GIVYISHR++E+  I D  TV RDGQ+I+  +   +    LI MMVG
Sbjct: 182 LFRVTRLLKEQGTGIVYISHRLEELALIADRATVMRDGQYISTVDYECVKISDLIAMMVG 241

Query: 240 RKLEDQYPHLDKAPGDIR-LKVDNLCGPGV-NDVSFTLRKGEILGVSGLMGAGRTELMKV 297
           R L + YP  +     I  L+V+ L   GV ND++FTL +GEILG +GLMGAGRTEL + 
Sbjct: 242 RDLGNIYPRREALQQRIPVLEVNGLTRKGVLNDINFTLYRGEILGFAGLMGAGRTELARA 301

Query: 298 LYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALR 357
           ++GA    SG + L+G E V +   D +  GI Y++EDRK++GL L +SV+ N+ L    
Sbjct: 302 IFGADSIDSGTLKLNGKETVIKDISDAIQQGISYLTEDRKKEGLALNLSVERNIMLGNYP 361

Query: 358 YFSRAGGSLKHADEQQAVSDFIRLFNVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVL 417
            +S   G++     QQ   + ++   +KTP++EQA   LSGGNQQK+ IAR +     +L
Sbjct: 362 EYSDRFGNVDSRRCQQTSEEQVKALRIKTPNLEQAALNLSGGNQQKIIIARWVCKDTDIL 421

Query: 418 ILDEPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVMHEGHLSGEF 477
           I DEPTRG+DVGAK EIY+L+N+  A G SII++SSE+PEVLGM DRI+VM  G ++GE 
Sbjct: 422 IFDEPTRGIDVGAKLEIYELMNRLVAKGKSIIMISSELPEVLGMCDRILVMRSGRITGEL 481

Query: 478 TREQATQEVLMAAA 491
           + ++ATQE +M  A
Sbjct: 482 SAKEATQEKIMQYA 495



 Score = 84.3 bits (207), Expect = 9e-21
 Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 8/232 (3%)

Query: 266 PGV---NDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQ 322
           PGV   NDV F+LR+GE+  + G  GAG++ LMK+L G      G +  +   V    P 
Sbjct: 16  PGVLALNDVQFSLRRGEVHALLGENGAGKSTLMKILSGVYQPDEGEIIFEDKPVSFSDPL 75

Query: 323 DGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLF 382
                GI  I ++     L   ++V+EN+ +    +  +    L    ++QA  + ++  
Sbjct: 76  SAQNVGITIIHQEFN---LFPELTVEENIFI-GREFCKKNRWRLDEKQQRQATIEILQKL 131

Query: 383 NVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFK 442
           N+     +  +  L+   QQ V IA+ +    ++LI+DEPT  +     + ++++    K
Sbjct: 132 NLAIKP-DTLVADLTVAQQQMVEIAKAISVNARILIMDEPTAALTETEIESLFRVTRLLK 190

Query: 443 ADGLSIILVSSEMPEVLGMSDRIIVMHEGHLSGEFTREQATQEVLMAAAVGK 494
             G  I+ +S  + E+  ++DR  VM +G        E      L+A  VG+
Sbjct: 191 EQGTGIVYISHRLEELALIADRATVMRDGQYISTVDYECVKISDLIAMMVGR 242