Pairwise Alignments

Query, 330 a.a., D-xylose transporter subunit from Escherichia coli BL21

Subject, 356 a.a., L-arabinose ABC transporter, substrate-binding protein AraF from Variovorax sp. SCN45

 Score =  170 bits (431), Expect = 4e-47
 Identities = 112/313 (35%), Positives = 172/313 (54%), Gaps = 21/313 (6%)

Query: 39  RWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNV 98
           RW  D     K  +  G K  +Q A+ +   Q++QIENM+ +G  VLVI   +G  LS+V
Sbjct: 43  RWIADGANMQKYFKDKGYKTDLQYADDDIPNQLAQIENMVTKGSKVLVIAAIDGTTLSDV 102

Query: 99  VKEAKQEGIKVLAYDRMINDA-DIDFYISFDNEKVGELQAKALVDIV------PQGNYFL 151
           +++A  +G+KV+AYDR+I  + ++D+Y +FDN +VG LQA+++   +         N  L
Sbjct: 103 LQKAADKGVKVIAYDRLIKGSKNVDYYATFDNFQVGVLQAQSIEAALGLKSGKGPFNIEL 162

Query: 152 MGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQW------VDGWLPENALKIMENAL 205
            GGSP DNNA  F  G M VL PY+ SGK+ V   Q          W    A   M+N L
Sbjct: 163 FGGSPDDNNAFFFYNGAMSVLDPYIKSGKLVVRSKQMGMDKVGTLRWDGAVAQARMDNLL 222

Query: 206 TA--NNNKIDAVVASNDATAGGAIQALSAQGLSG----KVAISGQDADLAGIKRIAAGTQ 259
           +A    +++DAV++  D  + G + +L   G          +SGQDA++  IK I    Q
Sbjct: 223 SAYYTKDRVDAVLSPYDGLSIGILSSLKGVGYGSGSQPMPVVSGQDAEVPSIKSILRKEQ 282

Query: 260 TMTVYKPITLLANTAAEIAVELGNGQEPKAD--TSLNNGLKDVPSRLLTPIDVNKNNIKD 317
           T TV+K    LA     +   + +G++P+ +   + NNG+K VPS LL P+ V+ +N K 
Sbjct: 283 TSTVFKDTRELAKVTVSMVDAMLSGKQPEVNDTKTYNNGIKVVPSYLLKPVSVDASNWKV 342

Query: 318 TVIKDGFHKESEL 330
            +I  G++KES++
Sbjct: 343 VLIDSGYYKESQI 355