Pairwise Alignments

Query, 330 a.a., D-xylose transporter subunit from Escherichia coli BL21

Subject, 354 a.a., sugar binding protein from Agrobacterium fabrum C58

 Score =  203 bits (517), Expect = 5e-57
 Identities = 127/324 (39%), Positives = 184/324 (56%), Gaps = 21/324 (6%)

Query: 28  IGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVI 87
           +G+A+      RW  D +  VK+ +  G K  +Q A+ +   Q+SQIENM+ +GV VLVI
Sbjct: 30  VGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVI 89

Query: 88  IPYNGQVLSNVVKEAKQEGIKVLAYDRMI-NDADIDFYISFDNEKVGELQAKALVDIV-- 144
              +G  LS+V+K+A ++GIKV+AYDR+I N  D+ +Y +FDN +VG LQA ++ D +  
Sbjct: 90  ASIDGTTLSDVLKQAGEQGIKVIAYDRLIRNSGDVSYYATFDNFQVGVLQATSITDKLGL 149

Query: 145 ----PQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKV-VGDQWVD-----GWLP 194
                  N  L GGSP DNNA  F  G M VLKPY+DSGK+ V  G   +D      W P
Sbjct: 150 KDGKGPFNIELFGGSPDDNNAFFFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLRWDP 209

Query: 195 ENALKIMENALTA--NNNKIDAVVASNDATAGGAIQALSAQGLSGK----VAISGQDADL 248
             A   M+N L+A   + K+DAV++  D  + G I +L   G   K      +SGQDA++
Sbjct: 210 ATAQARMDNLLSAYYTDAKVDAVLSPYDGLSIGIISSLKGVGYGTKDQPLPVVSGQDAEV 269

Query: 249 AGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGNGQEPKAD--TSLNNGLKDVPSRLLT 306
             +K I AG Q  T++K    LA     +   +  G+EP+ +   +  NG+K VPS LL 
Sbjct: 270 PSVKSIIAGEQYSTIFKDTRELAKVTVNMVNAVMEGKEPEVNDTKTYENGVKVVPSYLLK 329

Query: 307 PIDVNKNNIKDTVIKDGFHKESEL 330
           P+ V K N K  ++  G++KE +L
Sbjct: 330 PVAVTKENYKQVLVDGGYYKEDQL 353