Pairwise Alignments

Query, 240 a.a., putative PAS domain-containing DNA-binding transcriptional regulator from Escherichia coli BL21

Subject, 205 a.a., hypothetical protein from Pseudomonas fluorescens SBW25

 Score = 50.8 bits (120), Expect = 2e-11
 Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 9/197 (4%)

Query: 34  AVVDGLAMLIGSHCEIVLHSLQDLKCSAIRIANGEHTGRKIGSPITDLALRMLHDMTGAD 93
           A  DG+A L+    E V+H ++      + IANG  + RK+G       L  L    G D
Sbjct: 9   AAADGIAALLFPDLEAVVHDIRS--GLIVHIANG-FSKRKVGDASLICNLPELDQ--GLD 63

Query: 94  SSVSKCYFTRAKSGVLMKSLTIAIRNREQRVIGLLCINMNLDV--PFSQIMSTFVPPETP 151
             V   Y     +   ++S++IA R+ E  ++ LLC+N ++       +++S F     P
Sbjct: 64  --VIGPYEKAGPNNRTLRSISIAARSEEGDIVALLCLNFDMTALSQVQKLLSGFAVGLQP 121

Query: 152 DVGSSVNFASSVEDLVTQTLEFTIEEVNADRNVSNNAKNRQIVLNLYEKGIFDIKDAINQ 211
               +  F++   + +   +E    E    R      +    +      G+ DI++ ++ 
Sbjct: 122 QARPAPLFSADWREKLNDIVEAISVEHCVRRRDFGRTEIMYALAQARANGLLDIRNFVDY 181

Query: 212 VADRLNISKHTVYLYIR 228
             +  +IS+ TVY Y+R
Sbjct: 182 FGEYFDISRATVYNYLR 198