Pairwise Alignments

Query, 311 a.a., dsd operon activator; autorepressor from Escherichia coli BL21

Subject, 305 a.a., Glycine cleavage system transcriptional activator from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  140 bits (353), Expect = 4e-38
 Identities = 90/288 (31%), Positives = 140/288 (48%), Gaps = 8/288 (2%)

Query: 17  LSKMHTFEVAARHQSFALAAEELSLSPSAVSHRINQLEEELGIQLFVRSHRKVELTHEGK 76
           L+ +  F+ AARH SF  AAEEL ++ +AVSH+I  LE+ LG++LF R +R + LT EG+
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 77  RVYWALKSSLDTLNQEILDIKNQELSGTLTLYSRPSIAQCWLVPALGDFTRRYPSISLTV 136
             +  +K     L +    ++ +   G LT+   PS A  WLVP L  F   YP I + +
Sbjct: 68  SYFLDIKEIFSQLTEATRKLQARSAKGALTVSLLPSFAIHWLVPRLSSFNSAYPGIDVRI 127

Query: 137 LTGNDNVNLQRAGIDLAIYFDDAPSAQLTHHFLMDEEILPVCSPEYAQRHALTNTVINLC 196
              +   +     +D+AI++       L    L  E +LPVCSP          T  +L 
Sbjct: 128 QAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPEDLA 187

Query: 197 HCTLLHDRQAWSNDSGTDEWHSWAQHYAVN-LPTSSGIGFDRSDLAVIAAMNHIGVAMGR 255
             TLLH       D+   +W ++ +   +N +    G  F  S + + AA++  GVA+  
Sbjct: 188 KHTLLH-------DASRRDWQTYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQGVALAN 240

Query: 256 KRLVQKRLASGELVAPFGDMTVKCHQHYYITTLPGRQWPKIEAFITWL 303
             + Q  + +G LV PF D+ V  +  Y +      +  KI AF  W+
Sbjct: 241 NVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWI 288