Pairwise Alignments

Query, 311 a.a., dsd operon activator; autorepressor from Escherichia coli BL21

Subject, 308 a.a., transcriptional regulator, LysR family from Agrobacterium fabrum C58

 Score =  142 bits (359), Expect = 8e-39
 Identities = 92/290 (31%), Positives = 149/290 (51%), Gaps = 13/290 (4%)

Query: 17  LSKMHTFEVAARHQSFALAAEELSLSPSAVSHRINQLEEELGIQLFVRSHRKVELTHEGK 76
           LS +  FE A+R  S   AA EL L+  AVS +I  LEE+LG+ LF+R  + + LT  G+
Sbjct: 12  LSLLAAFEAASRTGSVTAAARELGLTQGAVSRQILALEEQLGVALFLRERQTIRLTRAGE 71

Query: 77  RVYWALKSSLDTLNQEILDIKNQELSGTLTLYSRPSIAQCWLVPALGDFTRRYPSISLTV 136
                ++ +L  ++   L+++     GTL L   PS    WLVP L DF  R+P IS+ +
Sbjct: 72  GYAREIREALRRISTASLNLRANPDGGTLNLGVLPSFGTRWLVPRLPDFIARHPGISVNL 131

Query: 137 LTGNDNVNLQRAGIDLAIYF--DDAPSAQLTHHFLMDEEILPVCSPEYAQRHALTNTVIN 194
           LT +   + +   +D AI+F     P  +L   FLM E+++PVCSP + + + L+    +
Sbjct: 132 LTRSSLFDFRTDTVDAAIHFGLPHWPGTELA--FLMHEKVIPVCSPAFKELYGLSRP-DD 188

Query: 195 LCHCTLLHDRQAWSNDSGTDEWHSWAQHYAVNLPTSSGIGFDRSDLAVIAAMNHIGVAMG 254
           L H  LLH        +  D W  W + + V      G+ FD+      A+   +G ++ 
Sbjct: 189 LLHVPLLH------MTTRPDAWEQWFRSHDVRFDNVHGMLFDQFTTIAEASSAGVGASLV 242

Query: 255 RKRLVQKRLASGELVAPFGDMTVKCHQHYYITTLPGR-QWPKIEAFITWL 303
              ++++ L SG LV+      V+  + YY+  +P R  +P +E+F  W+
Sbjct: 243 PSFMIEEELRSGRLVSAVAG-EVESEEAYYLACMPDRATYPPLESFRRWI 291