Pairwise Alignments

Query, 340 a.a., autoinducer 2-binding protein from Escherichia coli BL21

Subject, 318 a.a., D-ribose ABC transporter, substrate-binding component RbsB (from data) from Pseudomonas simiae WCS417

 Score = 81.3 bits (199), Expect = 3e-20
 Identities = 77/295 (26%), Positives = 132/295 (44%), Gaps = 18/295 (6%)

Query: 10  ALLSVLGIAAISMNVQAAERIAFIPKLVGVGFFTSGGNGAQQAGKELGVD---VTYDGPT 66
           A  + L +++   +  A  ++  + K +   FF +  +GA+   KE   D   +T     
Sbjct: 17  AASAALPLSSAFADDAAKPKVGLVMKSLANEFFVTMQDGAKTYQKEHAADFDMITNGIKN 76

Query: 67  EPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVRVLTWDSDTKPE-CRS 125
           E   S Q+ ++N  +    NAI+++      L   LK+A   G++V+  D+   P+  +S
Sbjct: 77  ETDTSAQIDIVNQMILAKVNAIVIAPADSKALVTVLKKASDAGIKVVNIDNRLDPDVLKS 136

Query: 126 YYIN---QGTPAQLGGMLV-DMAARQVNKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKE 181
             ++    G   + G  LV D  A+Q+     KV      PT T+  Q  + A  K A +
Sbjct: 137 KNLDIPFVGPDNRKGSKLVGDYLAKQLASGD-KVGIIEGVPTTTNAQQ--RTAGYKDAMD 193

Query: 182 HPGWEIVTTQFGYNDATKSLQTAEGILKAYSDLDAIIAPDAN-ALPAAAQAAENLKNDKV 240
             G +IV+TQ G  +  +  + A  +L  Y DL A++A + N AL A +      K  KV
Sbjct: 194 AAGMKIVSTQSGNWEIDQGQKVASAMLSEYPDLKALLAGNDNMALGAVSAVRAAGKAGKV 253

Query: 241 AIVGFSTPNVMRPYVERGTVKEFGLWDVVQQGKISVYVADALLKKGSMKTGDKLD 295
            +VG+     ++P ++ G V         QQ    +  A  L+K      G+K+D
Sbjct: 254 LVVGYDNIEAIKPMLQDGRVLATADQAAAQQAVFGIQNALKLVK------GEKVD 302