Pairwise Alignments

Query, 716 a.a., ATP-dependent DNA helicase from Escherichia coli BL21

Subject, 714 a.a., putative Helicase from Pseudomonas putida KT2440

 Score =  312 bits (800), Expect = 3e-89
 Identities = 240/726 (33%), Positives = 353/726 (48%), Gaps = 64/726 (8%)

Query: 7   LKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG----EEGRH------LAIEAPT 56
           LKA I   Y    E      PR  QR MIA+VAK L      +EGR       +A+EA T
Sbjct: 6   LKATIQGAYSRFLEA-KSLKPRYGQRLMIAEVAKVLGDIACDDEGRRAGEPAVVAVEAGT 64

Query: 57  GVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTAAFGR 115
           G GKT++Y +  I  A+   K LV++TA VALQ+QI  KDLP L++    +  F  A GR
Sbjct: 65  GTGKTVAYSLAAIPAAKAAGKRLVIATATVALQEQIVFKDLPDLMRSSGLNFSFALAKGR 124

Query: 116 GRYVCPRNLTALASTEPTQQDLLAFLDDE--LTPNNQEEQKRCAKLKGDLDTYKWDGLRD 173
           GRY+C   L  L      Q       ++E      ++  QK    +   L   +WDG RD
Sbjct: 125 GRYLCLSKLDILLQEGHAQSATAQLFEEEGFRIEVDERSQKLFNSMIEKLAGNRWDGDRD 184

Query: 174 HTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA--AM 231
               A++D  W RL+TD + C  R+C  +++C F+ AR  + + +V+V NH +V+A  A+
Sbjct: 185 SWPEALEDQDWARLTTDHSQCTGRHCPNFQQCVFYKAREGMGKVDVIVTNHDMVLADLAL 244

Query: 232 ESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEI--TAPWYRLQLDLFTKLVAT---- 285
              AVLPDP++ + V DEGHHLPD A       + +  TA W        TKL+A     
Sbjct: 245 GGGAVLPDPRDTMYVFDEGHHLPDKAIGHFAHYSRLRSTADWLEQTAKNLTKLLAQHPLP 304

Query: 286 -----CMEQFRPKTIPPLAIPERLNAH-----CEELYELIASLNNILNLYMPAGQEAEHR 335
                 +EQ     +P LA   R         CE++ +   S +          +   +R
Sbjct: 305 GDLGKYIEQ-----VPELAREVRTQQQFMFTLCEQVADFRPSEDT------EGRERPRYR 353

Query: 336 FAMGELPDEV----LEICQRLAKLTEMLRGLAELFLNDLSEKTG----SHDIVRLHRLIL 387
           F  G +P+++    +E+ +  A+L ++   LA+L    +  +      SH     + L  
Sbjct: 354 FEGGVVPEQIREVGIELKKGFARLNDLFTRLADLLKEGMDGEVNIGIASHQAEEWYPLFG 413

Query: 388 QM-NRALGMFEAQSKLWRLASLAQSSGAP-VTKWATREEREGQLHLWFHCVGIRVSDQLE 445
            +  RA G +E    LW   +      +P + +W T  E      +  +   I  +D L 
Sbjct: 414 SLVTRAQGNWE----LWTAFTAEDPEDSPPMARWLTLAESGALFDIEVNASPILAADMLR 469

Query: 446 RLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRM 505
           R LW      +VTSATL +L  F R +  SGL   A    V   SPF H + G + +P +
Sbjct: 470 RSLWSVAHGALVTSATLTALGKFDRFRMRSGLPRDAVTCVVP--SPFVHGDAGLLRVPDL 527

Query: 506 RVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQ 564
           + +P   +   H A +       VE  +  G LVLF+S + MQ   D +  D R ++L+Q
Sbjct: 528 QADPR--DAAAHTAAIIRELPNIVEDAR--GALVLFSSRKQMQDVFDGLDRDWRKLVLIQ 583

Query: 565 GDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVI 624
           G+  +   +  H+ RV +G+ SVL GL SFAEG+DL G     V I KI F   D PV  
Sbjct: 584 GNLSKQETLNKHKARVDDGQHSVLFGLASFAEGVDLPGAYCEHVVIAKIPFAVPDDPVEA 643

Query: 625 TEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLL 684
              EW+++    PF   ++P AS  LIQ  GRL+R+    G + + D+RL+T+ YGK +L
Sbjct: 644 ALAEWIEARGGNPFMEIAVPDASLKLIQACGRLLRTEQDRGVITLLDRRLVTQRYGKAIL 703

Query: 685 DALPVF 690
           +ALP F
Sbjct: 704 NALPPF 709