Pairwise Alignments

Query, 716 a.a., ATP-dependent DNA helicase from Escherichia coli BL21

Subject, 715 a.a., ATP-dependent helicase DinG/Rad3 from Pseudomonas sp. S08-1

 Score =  319 bits (818), Expect = 3e-91
 Identities = 238/726 (32%), Positives = 358/726 (49%), Gaps = 55/726 (7%)

Query: 3   LTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG----EEGRH------LAI 52
           L++ LK+QI   Y    E       R  QR MIA+VAK L      EEG+       +A+
Sbjct: 2   LSSELKSQIQGAYSRFLEA-KGLKARYGQRLMIAEVAKVLGAIKHNEEGQRDGEPAVVAV 60

Query: 53  EAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLP-LLKKIIPDLKFTA 111
           EA TG GKT++Y +  I  A+   K LV++TA VALQ+QI  KDLP L++       F  
Sbjct: 61  EAGTGTGKTVAYSLAAIPTAKAAGKRLVIATATVALQEQIVHKDLPDLMRNAGLQFSFAL 120

Query: 112 AFGRGRYVCPRNLTALASTEPTQQDLLAFLDDE--LTPNNQEEQKRCAKLKGDLDTYKWD 169
           A GRGRY+C   L  L      Q       ++E      ++  QK  +K+   L   +WD
Sbjct: 121 AKGRGRYLCLSKLDMLLQEGQAQSATAQMFEEEGFRIDVDENSQKLYSKMIEKLAGNRWD 180

Query: 170 GLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMA 229
           G RD     ++D +W  L+TD + C NR+C  +++C F+ AR  + + +V+V NH +V+A
Sbjct: 181 GDRDSWPEELEDQVWGTLTTDHSQCTNRHCPNFQQCAFYKAREGMTKVDVIVTNHDMVLA 240

Query: 230 --AMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEI--TAPWYRLQLDLFTKLVAT 285
             A+   AVLPDP+  L V DEGHHLPD A         +  TA W        TKL+A 
Sbjct: 241 DLALGGGAVLPDPRETLYVFDEGHHLPDKAIGHFAHFTRLRSTADWLGQVEKNLTKLLAQ 300

Query: 286 ---------CMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRF 336
                     +EQ   +        + + + CE+L +  A  +      M   +   HRF
Sbjct: 301 HPLPGDLGRLIEQVPEQARELRTQQQFMFSACEQLADFRAGED------MEGRERPRHRF 354

Query: 337 AMGELPDEV----LEICQRLAKLTEMLRGLAELFLNDLSEK-----TGSHDIVRLHRLIL 387
             G +P+ +    +E+ +  AKLT++   L EL    + ++       SH     + L  
Sbjct: 355 EGGLVPEHLRELGIELKKGFAKLTDVFTRLTELLKQAMDDEGTSIGLASHQAEEWYPLFG 414

Query: 388 QM-NRALGMFEAQSKLWRLASLAQSSGAP-VTKWATREEREGQLHLWFHCVGIRVSDQLE 445
            +  RA G +E    LW   ++     +P + +W T  +      +  +   I  ++ L 
Sbjct: 415 SLLARAQGNWE----LWTAFTVEDPEDSPPMARWLTLADSGALFDIEVNASPILAAETLR 470

Query: 446 RLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRM 505
           R LW      +VTSATL +L +F R +  SGL + A    V   SPF+H + G + +P +
Sbjct: 471 RNLWNVAYGALVTSATLTALGTFDRFRMRSGLPKAAVTAVVP--SPFHHADAGVLRVPDL 528

Query: 506 RVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVT-DLRLMLLVQ 564
           + +P   +   H A +       V+  +  G LVL++S + MQ   D +  D R  +L+Q
Sbjct: 529 KADPR--DAAAHTAAIIRDLPALVKGAR--GTLVLYSSRKQMQDVFDGLDRDWRKRVLIQ 584

Query: 565 GDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVI 624
           G+  +   +  H+ RV +GE SVL GL SFAEG+DL G     V I KI F   D PV  
Sbjct: 585 GNLSKQETLNKHKARVDDGEESVLFGLASFAEGVDLPGAYCEHVVIAKIPFAVPDDPVEA 644

Query: 625 TEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLL 684
              EW+++    PF   ++P AS  LIQ  GRL+R+    G + + D+R++T+ YGK +L
Sbjct: 645 ALAEWIEARGGNPFMEIAVPDASLRLIQACGRLLRTEADRGTITLLDRRVVTQRYGKAIL 704

Query: 685 DALPVF 690
           +ALP F
Sbjct: 705 NALPPF 710