Pairwise Alignments

Query, 673 a.a., exision nuclease of nucleotide excision repair, DNA damage recognition component from Escherichia coli BL21

Subject, 897 a.a., UvrABC system protein B from Xanthobacter sp. DMC5

 Score =  778 bits (2009), Expect = 0.0
 Identities = 400/677 (59%), Positives = 497/677 (73%), Gaps = 25/677 (3%)

Query: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64
           F + S F+P+GDQP+AI+ L    E G   Q LLGVTGSGKTFT+A VI  LQRP +VLA
Sbjct: 100 FTMKSDFQPAGDQPQAIKELCAQAEAGDRDQVLLGVTGSGKTFTMAKVIEKLQRPAIVLA 159

Query: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124
           PNKTLAAQLYGE K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 160 PNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 219

Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184
           +AT+++LER DV++VASVS IYG+G  + Y  M   + VG  IDQR ++  L  LQY R 
Sbjct: 220 AATRSLLERDDVIIVASVSCIYGIGSVETYSAMTFDIKVGERIDQRGLIADLVALQYKRI 279

Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244
              F RGTFRVRG+ ++IFPA  +D A RV LF +EVE ++ FDPLTGQ    +    +Y
Sbjct: 280 QSDFARGTFRVRGDSVEIFPAHYEDRAWRVSLFGDEVESIAEFDPLTGQKSGDMKSVRVY 339

Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304
             +HYVTPR  ++QA+  IK EL  R   L +  +LLE QRL QRT++DLEMM   G C+
Sbjct: 340 AASHYVTPRPTLIQAISGIKAELKMRLDELYKMGRLLEAQRLEQRTRYDLEMMEATGSCA 399

Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364
           GIENYSR+L+GR PGEPPPTLF+Y+P + L+ +DESHVT+PQIG MYRGD  RK TL EY
Sbjct: 400 GIENYSRWLTGRKPGEPPPTLFEYVPDNALVFIDESHVTVPQIGAMYRGDFRRKATLAEY 459

Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424
           GFRLPS +DNRPL+FEE+EA+ PQT++VSATPG++E+ ++GG  V+QV+RPTGL+DP +E
Sbjct: 460 GFRLPSCMDNRPLRFEEWEAMRPQTVHVSATPGSWEMNQTGGVFVEQVIRPTGLIDPPVE 519

Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484
           VRP  TQVDDLL E+R  AA   R LVT LTKRMAEDLTEYL E+G RVRY+HSDIDT+E
Sbjct: 520 VRPARTQVDDLLGEVRAVAAKGYRTLVTVLTKRMAEDLTEYLHENGIRVRYMHSDIDTIE 579

Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544
           R+EIIRDLRLG FDVL+GINLLREGLD+PE  LVAILDADKEGFLRSE SL+QTIGRAAR
Sbjct: 580 RIEIIRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAAR 639

Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604
           NV+G+ +LY D IT SM +A+ ET RRREKQ  YN EHGITP+ + K + DIL       
Sbjct: 640 NVDGRVVLYADHITGSMERAMAETSRRREKQVAYNTEHGITPESVKKAIGDIL------- 692

Query: 605 KTKAKGRGKSRPIVEPDNVPMDMS--------PKALQQKIHELEGLMMQHAQNLEFEEAA 656
                       + E D+V +D             L+  + +LE  M   A +L+FE AA
Sbjct: 693 ----------NSVYERDHVQVDAGLAEEGAAFGHNLKAVMADLEKRMRAAAADLDFETAA 742

Query: 657 QIRDQLHQLRELFIAAS 673
           ++RD++ +L    +A S
Sbjct: 743 RLRDEIRRLEATELAVS 759