Pairwise Alignments

Query, 673 a.a., exision nuclease of nucleotide excision repair, DNA damage recognition component from Escherichia coli BL21

Subject, 671 a.a., excinuclease ABC subunit B from Pseudomonas sp. S08-1

 Score =  926 bits (2394), Expect = 0.0
 Identities = 464/664 (69%), Positives = 557/664 (83%), Gaps = 2/664 (0%)

Query: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64
           F+L + FKP+GDQPEAIR++ EGLE GL+HQTLLGVTGSGKTF+IANVIA +QRPT+VLA
Sbjct: 4   FQLVTRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAKVQRPTLVLA 63

Query: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124
           PNKTLAAQLYGE K FFP N+VEYFVSYYDYYQPEAYVP+SDTFIEKD+S+N+HIEQMRL
Sbjct: 64  PNKTLAAQLYGEFKSFFPNNSVEYFVSYYDYYQPEAYVPASDTFIEKDSSINDHIEQMRL 123

Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184
           SATKA++ER D +VVA+VS+IYGLG P+ YL+M+LH+  G  +DQRA+LRRLA+LQY RN
Sbjct: 124 SATKALIERPDAIVVATVSSIYGLGSPEEYLRMVLHVDRGDKMDQRALLRRLADLQYTRN 183

Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244
           D  F R TFRVRG+VID+FPAESD  A+RVELFD+EVE LS FDPLTG+++  +PRFT Y
Sbjct: 184 DMDFARATFRVRGDVIDVFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIKKLPRFTFY 243

Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304
           PK+HYVTPRE ++ A+E IK EL  R   L  NNKL+E QRL QRT+FDLEM+ ELGYC+
Sbjct: 244 PKSHYVTPRETLLGAVENIKAELKERLDYLRTNNKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364
           GIENYSR+LSGR PGEPPPTL+DYLP + LLV+DESHVT+PQIG MY+GDR+RKETLVEY
Sbjct: 304 GIENYSRYLSGRAPGEPPPTLYDYLPPESLLVIDESHVTVPQIGAMYKGDRSRKETLVEY 363

Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424
           GFRLPSALDNRP++FEE+EA +PQTI+VSATPGNYE E + G V++QVVRPTGL+DP +E
Sbjct: 364 GFRLPSALDNRPMRFEEWEAASPQTIFVSATPGNYEAEHA-GRVIEQVVRPTGLVDPEVE 422

Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484
           VRP  TQVDDLLSEIR+R A+ +RVLVTTLTKRMAEDLT+YL +H  +VRYLHSDIDTVE
Sbjct: 423 VRPARTQVDDLLSEIRKRVAVEQRVLVTTLTKRMAEDLTDYLADHDVKVRYLHSDIDTVE 482

Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544
           R+EIIRDLR G FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR
Sbjct: 483 RVEIIRDLRTGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604
           N++G+AILY D +T SM +AIGET+RRREKQ  +N  +GI P+G+ K + DIL       
Sbjct: 543 NLHGRAILYADNMTGSMQRAIGETDRRREKQLAFNAANGIVPKGVTKDIKDILEGAVVPG 602

Query: 605 KTKAKGRGKSRPIVEPDNVPMDM-SPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663
               K +  ++   E      ++ SP  + ++I +LE  M Q A++LEFE AAQ+RD++ 
Sbjct: 603 ARSNKRKAAAKAAEESARYEAELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQLRDEIQ 662

Query: 664 QLRE 667
           +LR+
Sbjct: 663 KLRD 666