Pairwise Alignments

Query, 673 a.a., exision nuclease of nucleotide excision repair, DNA damage recognition component from Escherichia coli BL21

Subject, 988 a.a., excinuclease ABC subunit B from Agrobacterium fabrum C58

 Score =  770 bits (1988), Expect = 0.0
 Identities = 393/673 (58%), Positives = 494/673 (73%), Gaps = 17/673 (2%)

Query: 6   KLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAP 65
           +++S ++P+GDQP AI  L EG+  G   Q LLGVTGSGKTFT+A VI   QRP ++LAP
Sbjct: 172 RMDSEYQPAGDQPTAIADLVEGINSGERSQVLLGVTGSGKTFTMAKVIEATQRPAVILAP 231

Query: 66  NKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLS 125
           NKTLAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP SDTFIEK++S+NE I++MR S
Sbjct: 232 NKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHS 291

Query: 126 ATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185
           AT+++LER D ++VASVS IYG+G  + Y  M   + VG  +DQR +L  L   QY R D
Sbjct: 292 ATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMQVGDRLDQRQLLADLVAQQYKRRD 351

Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245
             FQRG+FRVRG+ I+IFPA  +D A R+ +F +E++ ++ FDPLTGQ    +    IY 
Sbjct: 352 MDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQKTGDLQSVKIYA 411

Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305
            +HYVTPR  +  A++ IKEEL  R   L +  +LLE QRL QRT++D+EM+   G C+G
Sbjct: 412 NSHYVTPRPTLNGAIKSIKEELKVRLAELEKAGRLLEAQRLEQRTRYDIEMLEATGSCAG 471

Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365
           IENYSR+L+GR PGEPPPTLF+Y+P + LL +DESHV++ QIGGMYRGD  RK TL EYG
Sbjct: 472 IENYSRYLTGRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAEYG 531

Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425
           FRLPS +DNRPL+FEE++A+ P T+ VSATPG++E+E+SGG   +QV+RPTGL+DP +EV
Sbjct: 532 FRLPSCMDNRPLRFEEWDAMRPLTVAVSATPGSWEMEQSGGVFAEQVIRPTGLIDPPVEV 591

Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485
           R   +QVDD+L EIR+ AA   R L T LTKRMAEDLTEYL E G RVRY+HSDIDT+ER
Sbjct: 592 RSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLER 651

Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545
           +EIIRDLRLG FDVLVGINLLREGLD+PE   VAILDADKEGFLRSE SLIQTIGRAARN
Sbjct: 652 IEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARN 711

Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL-------A 598
           V+GK ILY D IT SM +A+ ET RRREKQ  YN EHGITP+ +  K+ DIL        
Sbjct: 712 VDGKVILYADNITGSMKRAMEETSRRREKQMAYNAEHGITPESVKAKISDILDSVYERDH 771

Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658
           +  +I+    KG      +V  +          LQ  ++ LE  M   A +L+FE+AA++
Sbjct: 772 VRADISGVSGKGFADGGHLVGNN----------LQAHLNALEKSMRDAAADLDFEKAARL 821

Query: 659 RDQLHQLRELFIA 671
           RD++ +L+   +A
Sbjct: 822 RDEIKRLKAAELA 834