Pairwise Alignments

Query, 400 a.a., exonuclease, dsDNA, ATP-dependent from Escherichia coli BL21

Subject, 414 a.a., Nuclease SbcCD subunit D from Pseudomonas sp. DMC3

 Score =  169 bits (428), Expect = 1e-46
 Identities = 123/393 (31%), Positives = 186/393 (47%), Gaps = 36/393 (9%)

Query: 1   MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYAR 60
           +R+ HTSDWHLGQN + + R+ EH  FL+WLL      Q D +++AGD+FDT +PP  A+
Sbjct: 1   LRLFHTSDWHLGQNLHGQERDFEHACFLEWLLRQLHLAQPDVLLIAGDIFDTVNPPVKAQ 60

Query: 61  TLYNRFVVNL--QQTGCHLVVLAGNHDSVATLNESRDIMAFLNTTVV----------ASA 108
                F+V+   QQ    +V++AGNHDS + +     +M  L T  +            A
Sbjct: 61  ERLYDFIVSAHEQQPLLTIVMIAGNHDSGSRIELPAPLMRRLRTHALDRVLWLDDGQLDA 120

Query: 109 GHAPQILPRRDGTPGAVLCPIPFLRPRDIITSQAG---LNGIEKQQHLLAAITDYYQQHY 165
                 LP   G   A    +PFLRP ++  +  G   L GI +    L A         
Sbjct: 121 ERLLLPLPNAQGEITAWCLALPFLRPAEVTGAHLGDNYLRGIGQVHEWLIA--------- 171

Query: 166 ADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPA-DYIALGHIH 224
           A   K +  Q L  I+  H+   G+   D+ R + IG  +A PA  F  +  Y+ALGH+H
Sbjct: 172 AANAKRQPGQALIAISHAHMAG-GSVSEDSERSLIIGNAEALPASLFGESISYVALGHLH 230

Query: 225 RAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVTQPM-AVLK 283
           + Q + G E +RY GSPIPLSF E G    +  V      L SVE   +P +  +  +  
Sbjct: 231 KPQKVNGEERIRYSGSPIPLSFSEIGYQHQILDVVLDGETLVSVEPKLIPRSVNLQRIGP 290

Query: 284 GDLASITAQLEQWRDV-----SQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVLLV 338
             LA I  QL    ++     +Q  P WL++ +  DE   D++ +++   +   V ++ +
Sbjct: 291 APLAEILLQLADLPNIDLLAETQRQP-WLEVRVRLDEPQPDLRHQVETALQGKAVRLVRI 349

Query: 339 RRSREQRERVLASQQRETLSE---LSVEEVFNR 368
                       S    TL E   L+ +E+F+R
Sbjct: 350 AAEYAGNRGADGSDDGSTLIELDQLTPQELFSR 382