Pairwise Alignments

Query, 299 a.a., transcriptional activator of cyn operon; autorepressor from Escherichia coli BL21

Subject, 296 a.a., LysR family transcriptional regulator from Pseudomonas fluorescens SBW25

 Score =  140 bits (353), Expect = 4e-38
 Identities = 88/286 (30%), Positives = 144/286 (50%), Gaps = 2/286 (0%)

Query: 6   INYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIRLTDAGEVWR 65
           I  F+ +AE GSF  AA ALH+SQPALS+++++LEE LG  L DR+ R + LT  G  + 
Sbjct: 8   IRSFVKIAELGSFHEAADALHLSQPALSRRMKKLEEGLGTALLDRTTRRVSLTSVGRDFL 67

Query: 66  QYASRALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPSITLQLQ 125
             A R L +       I ++A+   G + +A  PT   YF+  ++  +  RYP I ++L 
Sbjct: 68  PKARRLLDDFDDSVLNIRELAERQSGRVTLACIPTAAFYFLPSVIRLYNERYPQIRIRLL 127

Query: 126 EMSQEKIEDMLCRDELDVGIAFAPVHSPELEAIPLLTESLALVVAQHHPLAVHEQVALSR 185
           ++S  +  + + R E D GI       P++E +PL+ E   L   + H LA    V  S 
Sbjct: 128 DLSANEGLEAVLRGEADFGINMMSGQHPDIEFVPLVNEPFVLACRRDHELAERSSVTWSE 187

Query: 186 LHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLELIRRTSLSTLLP--AA 243
           L + +L+ +      R  +DH        PQ   E   +S  L L+      + +P  A 
Sbjct: 188 LSNYRLIGVGRLSGNRMLLDHALSGLSWRPQWFYEVQHLSTSLGLVEAGLGVSAMPSLAM 247

Query: 244 IATQHDGLKAISLAPPLLERTAVLLRRKNSWQTAAAKAFLHMALDK 289
            A  H  L ++ L  P++ R+  L+ R+ +  + AA+ F+ + L++
Sbjct: 248 PAVDHPTLVSVPLIEPIVNRSLGLVYRRGASLSPAAEKFVSILLEQ 293