Pairwise Alignments

Query, 477 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 677 a.a., Lipopolysaccharide assembly protein B from Azospirillum sp. SherDot2

 Score = 90.9 bits (224), Expect = 1e-22
 Identities = 108/363 (29%), Positives = 144/363 (39%), Gaps = 30/363 (8%)

Query: 2   ATLSEATLL--AFDLHAAGRFAEAETLYARVLEAEPGYPDALHLSGILLGQIGRLEEGLV 59
           A  S A L+  A  LH +GR AEA+ LY + L A+P  PDALHL G++  Q GR  +   
Sbjct: 21  AAASAAALVGQAVPLHQSGRLAEADALYRQALAAQPRQPDALHLLGMIACQTGRFTDAAD 80

Query: 60  RIAEAVARRPDSAEYLLNYGNLLRAAGRTGAAMDAYRRAHALGA--PQAAEPLSGLLLEH 117
            I +AVA R D  +Y  N    L+A GR+  A  A R A  L    P+AA  L   L   
Sbjct: 81  LIGQAVAARRDVPDYHANLAYALQALGRSAEAERAARNALRLRRPFPEAANTLGNALNAQ 140

Query: 118 GTRCLDGRDPTAAEAAFMEASRLRPGDLRIRTGLADARFDRQDWEAALAAYRAVLALSPS 177
           G           A  A+  A R RP        L            A    R  +A +PS
Sbjct: 141 G-------KAEEAADAYRAALRARPDYAEAEGNLGTVLRSLGRSAEAEPLLRHAVAANPS 193

Query: 178 SRLVWYNSGVAACNAGRMAEAATAFRCAGTLAPDHLDTQEYLVATLFHCGRMAEAASEAC 237
                   G+A  + GR  E  TA R      PDH      L  +L   G  A  A    
Sbjct: 194 LLEAHAALGLALLDLGRSEEGETALRAVLARRPDHAPAALALAGSLQRRGADALPAHRRH 253

Query: 238 AILTWKAKAAREGQQGVGVA------PLPAASQDGRTRRIISFSLWGSASL----YMQGA 287
            +L     A  EG    G+A        PA     R  R+         +L     +QG 
Sbjct: 254 LML---EPADAEGWNAHGLALQVADRIAPAGDAFTRALRLAPTMAEAMTNLGTVRRLQGR 310

Query: 288 L----ENVRLAAEFYPGWTCRIHHDESVPASVLGELAAAGAEL-VAMEAGSGPARGLFWR 342
           +    +  R A +  PG+    H + ++    LG+ AAA  E  +A++A    A   F R
Sbjct: 311 IVESADLQRRALDLRPGYAA-AHTNLALALQDLGDEAAAEREFTLALDADPAQALARFNR 369

Query: 343 FLV 345
            L+
Sbjct: 370 SLL 372



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 34/130 (26%), Positives = 48/130 (36%), Gaps = 4/130 (3%)

Query: 14  LHAAGRFAEAETLYARVLEAEPGYPDALHLSGILLGQIGRLEEGLVRIAEAVARRPDSAE 73
           L  A R A A   + R L   P   +A+   G +    GR+ E       A+  RP  A 
Sbjct: 271 LQVADRIAPAGDAFTRALRLAPTMAEAMTNLGTVRRLQGRIVESADLQRRALDLRPGYAA 330

Query: 74  YLLNYGNLLRAAGRTGAAMDAYRRAHALGAPQAAEPLSGLLLE-HGTRCLDGRDPTAAEA 132
              N    L+  G   AA   +  A      QA    +  LL+    R  +G +  A   
Sbjct: 331 AHTNLALALQDLGDEAAAEREFTLALDADPAQALARFNRSLLQLRQGRLAEGWEDYAVR- 389

Query: 133 AFMEASRLRP 142
              E+ RL+P
Sbjct: 390 --FESGRLKP 397