Pairwise Alignments

Query, 996 a.a., Photosystem I assembly protein Ycf3 from Azospirillum sp. SherDot2

Subject, 652 a.a., Lipopolysaccharide assembly protein B from Azospirillum sp. SherDot2

 Score = 72.0 bits (175), Expect = 1e-16
 Identities = 74/271 (27%), Positives = 100/271 (36%), Gaps = 50/271 (18%)

Query: 127 AGGAAAVQAHRAQALARLRRGQLAEAAAACDTALRLADGAAQPAQPLRQAQAEALGTLAL 186
           A  A+A  A   +AL+  R G+ AEA A   T L    G              A   LA+
Sbjct: 25  APAASAGDAGFGRALSLHREGRTAEAEAGYRTVLAADAG-----------HTNANNNLAI 73

Query: 187 VRMLEGRVEEAEALFRRALSHRPVLPEILGNHASLLARLGRDEEALEQAEQAVALRPRLA 246
           +    G  EEA   +RRAL+     P +  NH  LL  +GR  EA E    A+ L+P  A
Sbjct: 74  ILRARGDWEEALGCYRRALARNAADPFVHSNHGCLLQDMGRSAEAEEALRTAIRLKPEYA 133

Query: 247 GTLHLIGTLHHRSGQLESAIAAFHRVLTVDPGHLDARLLLADSLRVAGHWTEAVTVCRDG 306
                +  +    G  E+A AA+                                    G
Sbjct: 134 EAHFNLANILRNRGDREAAKAAY------------------------------------G 157

Query: 307 LALIADPDDRTRTALLANLGTALQSGGDAAGALEAYGAALRLTPDLPEVHNNLARLHQET 366
            AL   PD     A L NLG   +   + A A+E + AAL+  P   E  NNL    +E 
Sbjct: 158 EALRLKPD---MAAALCNLGDLHKGAVELARAVECFVAALKADPKSAEAWNNLGETLKEM 214

Query: 367 GNPDAAIEDLRRAAAGRPLPLPLRRTLLSLL 397
           G  + AI   ++     P    +   LL  L
Sbjct: 215 GRIEEAIGVFQKGLEAHPSHALMHSNLLLAL 245



 Score = 48.5 bits (114), Expect = 1e-09
 Identities = 74/289 (25%), Positives = 102/289 (35%), Gaps = 57/289 (19%)

Query: 13  PTGQSGPDHQAAGQR-LAQVLDLCRSGRPEEAEGPYRTLCGTPPQDPAALLSLADAARIL 71
           P+ QS     +AG     + L L R GR  EAE  YRT+              ADA    
Sbjct: 19  PSPQSTAPAASAGDAGFGRALSLHREGRTAEAEAGYRTVLA------------ADAG--- 63

Query: 72  GRPADSVAWAEAAVRRQPDRAEGWSVLALAFIAAGRVDDGYAAAAEALRRTGHEAAGGAA 131
                                   + LA+   A G  ++       AL R        AA
Sbjct: 64  -------------------HTNANNNLAIILRARGDWEEALGCYRRALAR-------NAA 97

Query: 132 AVQAHRAQALARLRRGQLAEAAAACDTALRLADGAAQPAQPLRQAQAEALGTLALVRMLE 191
               H          G+ AEA  A  TA+R           L+   AEA   LA +    
Sbjct: 98  DPFVHSNHGCLLQDMGRSAEAEEALRTAIR-----------LKPEYAEAHFNLANILRNR 146

Query: 192 GRVEEAEALFRRALSHRPVLPEILGNHASLLARLGRDEEALEQAEQAVALRPRLAGTLHL 251
           G  E A+A +  AL  +P +   L N   L         A+E    A+   P+ A   + 
Sbjct: 147 GDREAAKAAYGEALRLKPDMAAALCNLGDLHKGAVELARAVECFVAALKADPKSAEAWNN 206

Query: 252 IGTLHHRSGQLESAIAAFHRVLTVDPGHLDARLLLADSLRVAGHWTEAV 300
           +G      G++E AI  F + L   P H     L+  +L +A H+T AV
Sbjct: 207 LGETLKEMGRIEEAIGVFQKGLEAHPSH----ALMHSNLLLALHYTPAV 251



 Score = 45.4 bits (106), Expect = 1e-08
 Identities = 39/127 (30%), Positives = 54/127 (42%)

Query: 328 ALQSGGDAAGALEAYGAALRLTPDLPEVHNNLARLHQETGNPDAAIEDLRRAAAGRPLPL 387
           +L   G  A A   Y   L         +NNLA + +  G+ + A+   RRA A      
Sbjct: 40  SLHREGRTAEAEAGYRTVLAADAGHTNANNNLAIILRARGDWEEALGCYRRALARNAADP 99

Query: 388 PLRRTLLSLLIAAGRTAEAETEAFGIARTAPDDAELCFGIAALFLQGGWRDQALPYVRKA 447
            +      LL   GR+AEAE       R  P+ AE  F +A +    G R+ A     +A
Sbjct: 100 FVHSNHGCLLQDMGRSAEAEEALRTAIRLKPEYAEAHFNLANILRNRGDREAAKAAYGEA 159

Query: 448 IRLAPDM 454
           +RL PDM
Sbjct: 160 LRLKPDM 166



 Score = 36.6 bits (83), Expect = 6e-06
 Identities = 39/160 (24%), Positives = 58/160 (36%), Gaps = 5/160 (3%)

Query: 19  PDHQAAGQRLAQVLDLCRSGRPEEAEGPYRTLCGTPPQDPAALLSLADAARILGRPADSV 78
           P++  A   LA +L     G  E A+  Y       P   AAL +L D  +     A +V
Sbjct: 130 PEYAEAHFNLANILR--NRGDREAAKAAYGEALRLKPDMAAALCNLGDLHKGAVELARAV 187

Query: 79  AWAEAAVRRQPDRAEGWSVLALAFIAAGRVDDGYAAAAEALR-RTGHEAAGGAAAVQAHR 137
               AA++  P  AE W+ L       GR+++      + L     H        +  H 
Sbjct: 188 ECFVAALKADPKSAEAWNNLGETLKEMGRIEEAIGVFQKGLEAHPSHALMHSNLLLALHY 247

Query: 138 AQAL--ARLRRGQLAEAAAACDTALRLADGAAQPAQPLRQ 175
             A+    + R  +A A    D  L      A P  P R+
Sbjct: 248 TPAVPPETIFRAHMAWAQRHADPLLPAGSRHANPRDPDRR 287