Pairwise Alignments

Query, 652 a.a., Lipopolysaccharide assembly protein B from Azospirillum sp. SherDot2

Subject, 624 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score =  129 bits (325), Expect = 3e-34
 Identities = 178/616 (28%), Positives = 251/616 (40%), Gaps = 64/616 (10%)

Query: 40  SLHREGRTAEAEAGYRTVLAADAGHTNANNNLAIILRARGDWEEALGCYRRALARNAADP 99
           +L   G   E  A   T +  D G      NLAI+L + G   +A   + RAL     D 
Sbjct: 47  ALCASGHGGEGLAHIGTAMLLDPGQPVYAVNLAILLHSFGLKADA--AFHRALRLRPGDA 104

Query: 100 FVHSNHGCLLQDMGRSAEAEEALRTAIRLKPEYAEAHFNLANILRNRGDREAAKAAYGEA 159
            +    G  + + G + +A   LR  + L+P  AEA+  +A + +  G  E A+ AY  A
Sbjct: 105 RLLDGLGSSMSEQGDNPQALIPLRHRLALEPNVAEAYRKVAIVAQRAGQLEEARRAYRRA 164

Query: 160 LRLKPD---MAAALCNLGDLHKGAVELARAVECFVAALKADPKSAEAWNNLGETLKEMGR 216
            RL      +      L  +   A E+  +     A L+   ++ E    + + L+E+G 
Sbjct: 165 WRLGGGDGLLVREALTLPAIPCSATEIEESRAHCAAVLR---QAREHGLRIDDPLREVG- 220

Query: 217 IEEAIGVFQKGLEAHPSHALMHSNLLLALHYTPAVPPETIFRAHMAWAQRHADPLLPAGS 276
               +  F        + AL   N  LA  Y  A P      AH             +GS
Sbjct: 221 ----VTSFFLSYHGLDNRAL---NGELAALYQEACPSLLYTAAHCR----------ESGS 263

Query: 277 RHANPRDPDRRLRIGYVSPDFCAHSVAFFAEPLIREHDRGHFEVFCYPASARSDVVTERL 336
             A      RRLR+G++S  F  H++    E LI    R  FEV  +      D +   L
Sbjct: 264 PGAAEDRAGRRLRVGFISDYFHNHTIGMLNEGLIERLSRERFEVVLFLTPGPDDDLRRHL 323

Query: 337 KGLSDGWRSLVGVDDARAAALIEQDGIDIL--VDLTGHTANNRLTLFARKPAPVQATWLG 394
           + ++D    +    DA A  +I ++ +D+L   D+ G +       FAR  AP Q    G
Sbjct: 324 RTVADCAVDIPRDLDA-ARHIIAEERLDVLYYTDI-GMSPFTYFLAFARL-APRQCLSWG 380

Query: 395 YPDTTGMRAIDWRFSDAIAEP-PGEADRLSAERIVRLPQGFHSYRPP---------LDVA 444
           +PDTTG+  +D   S  + EP  GEA    +ER++RLP     YR P         +D  
Sbjct: 381 HPDTTGIPTLDVFLSCDVMEPEDGEAH--YSERLIRLPGPTVCYRRPRLAEPRKTRIDFG 438

Query: 445 PPAEPPFHANGHVTFGSFNNTSKVTGEVVRVWSEILKR-VPGSRLIVKSAQMGDEETRRR 503
             AE   +      F       K+          IL+R   G  + V     G   TRR 
Sbjct: 439 LAAESRLYVCPQSLF-------KIHPVYDDALIAILRRDRDGILVFVDPRGQGAALTRRL 491

Query: 504 YLNTFVQCGID-AGRIELLARIDAANGHLRAYDRIDIGLDPFPYNGTTTTCEALWMGVPV 562
                   G D AGRI LL  +  A+      D  D+ LDPF Y+G  T+ EAL  G PV
Sbjct: 492 GAK-----GPDVAGRIHLLPGLGTADFIALTAD-ADVMLDPFHYSGGKTSLEALAFGTPV 545

Query: 563 VTLTGANHVARVGASLLTHCGLTELVASDMEGYIATAVALAGDPGRLDRLRRTMRSRL-- 620
           VT  GA    R      T  GL + VASD   Y+  AV L  D     RLR  +R R+  
Sbjct: 546 VTWPGAFMRGRHTLGFYTLMGLDDCVASDPADYVDRAVRLGTD----QRLRAQVRQRILE 601

Query: 621 NAAPLTDYKGFARGVE 636
            +A L D     R +E
Sbjct: 602 RSAVLFDDGASIRAIE 617



 Score = 29.6 bits (65), Expect = 4e-04
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 31  GDAGF--GRALSLHREGRTAEAEAGYRTVLAADAGHTNANNNLAIILRARGDWEEALGCY 88
           GDA    G   S+  +G   +A    R  LA +     A   +AI+ +  G  EEA   Y
Sbjct: 102 GDARLLDGLGSSMSEQGDNPQALIPLRHRLALEPNVAEAYRKVAIVAQRAGQLEEARRAY 161

Query: 89  RRALARNAAD 98
           RRA      D
Sbjct: 162 RRAWRLGGGD 171