Pairwise Alignments
Query, 533 a.a., hypothetical protein from Azospirillum sp. SherDot2
Subject, 2017 a.a., Lipopolysaccharide assembly protein B from Azospirillum sp. SherDot2
Score = 64.3 bits (155), Expect = 4e-14
Identities = 67/214 (31%), Positives = 82/214 (38%), Gaps = 40/214 (18%)
Query: 2 PSIHDILTEAVALHNGGQPERAAALYRDVLAVEPAEPHSLHLLGLQMRRSGCEAEGIALM 61
P +L AVA H G + A LY VLA P +P +LHL GL +SG A G +
Sbjct: 1438 PDPDRLLELAVAAHRSGAHDEATPLYERVLASRPRDPVALHLSGLLAHQSGASARGEGRI 1497
Query: 62 ARSLLLAPTLAPALFNQARALQDSGRLDEAIAHFRRKLELDPNCGVTSIALGSE------ 115
A ++ AP A A + G A A FR L + P+ LG+
Sbjct: 1498 AAAVAEAPEYATAHISLGNVRLALGMAGPAAASFRTALAVQPDSAAALTNLGNALDALER 1557
Query: 116 ---------------------------ALAR-GRLDEAER----ILRRAAVLEAGGAFAS 143
ALAR GR EAER LRRA LEAG S
Sbjct: 1558 SAAAAGLHRKAVAADPDLAEAHDNLGVALARLGRWAEAERAHAQALRRAPGLEAGWMNLS 1617
Query: 144 RLRRALERVATARGIARD--AADPSLPPGLVVRG 175
R L R+ A R A P+L + RG
Sbjct: 1618 VALRRLGRLDAAERAGRRALALAPALADAMANRG 1651
Score = 56.6 bits (135), Expect = 9e-12
Identities = 30/93 (32%), Positives = 51/93 (54%)
Query: 3 SIHDILTEAVALHNGGQPERAAALYRDVLAVEPAEPHSLHLLGLQMRRSGCEAEGIALMA 62
++ ++L A+ LH G+ A ALYR +L +PA +LHL + ++G AE +A +
Sbjct: 2 TVAELLDAALPLHRAGRLAEALALYRRILTDDPAHADALHLSAIIAHQTGRTAEALANLG 61
Query: 63 RSLLLAPTLAPALFNQARALQDSGRLDEAIAHF 95
+L + P A A + L D G L+EA++ +
Sbjct: 62 AALAVQPGFATAYNSLGNVLADLGMLEEALSAY 94
Score = 51.2 bits (121), Expect = 4e-10
Identities = 41/130 (31%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
Query: 11 AVALHNGGQPERAAALYRDVLAVEPAEPHSLHLLGLQMRRSGCEAEGIALMARSLLLAPT 70
A+ L N G P+ A L R + + SL L L R EA ++A ++ P
Sbjct: 180 AICLRNLGHPDAEACLRRALQDAPGDKDLSLELGALLNSRGDHEA-ACGVLAAAVAAHPG 238
Query: 71 LAPALFNQARALQDSGRLDEAIAHFRRKLELDPNCGVTSIALGSEALARGRLDEAERILR 130
+A F+ ALQ + RL EA+ FR L+ +P LG L G + A +L
Sbjct: 239 IAQLHFSYGTALQGTRRLREAVVQFRLALDREPAMQGACNNLGVALLELGEMGPATLVLS 298
Query: 131 RAAVLEAGGA 140
RA L G A
Sbjct: 299 RAVALSPGDA 308
Score = 45.4 bits (106), Expect = 2e-08
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 13/171 (7%)
Query: 13 ALHNGGQPERAAALYRDVLAVEPAEPHSLHLLGLQMRRSGCEAEGIALMARSLLLAPTLA 72
AL + A +R L EPA + + LG+ + G +++R++ L+P A
Sbjct: 249 ALQGTRRLREAVVQFRLALDREPAMQGACNNLGVALLELGEMGPATLVLSRAVALSPGDA 308
Query: 73 PALFNQARALQDSGRLD----EAIAHFRRKLELDPNCGVTSIALGSEALARGRLDEAERI 128
+ N +L++ L+ +RR L L P+ G + L + R L AER+
Sbjct: 309 MVVNNHGTSLENRYDLEADSERPARWYRRALRLRPDYGKALVNLAGIHILRRELHHAERL 368
Query: 129 LRRAAV---------LEAGGAFASRLRRALERVATARGIARDAADPSLPPG 170
RRAAV + GG R + R +A DA PS G
Sbjct: 369 YRRAAVADPRSVETFVNLGGLLLDRDDLSQAGRMYRRALAIDAGSPSALTG 419
Score = 38.9 bits (89), Expect = 2e-06
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
Query: 46 LQMRRSGCEAEGIALMARSLLLAPTLAPALFNQARALQDSGRLDEAIAHFRRKLELDPNC 105
L + R+G AE +AL R L P A AL A +GR EA+A+ L + P
Sbjct: 11 LPLHRAGRLAEALALYRRILTDDPAHADALHLSAIIAHQTGRTAEALANLGAALAVQPGF 70
Query: 106 GVTSIALGSEALARGRLDEA-----ERILRRAAVLEAGGAFASRLRRALERVATARGIAR 160
+LG+ G L+EA I + +EA A+ L+R R A AR
Sbjct: 71 ATAYNSLGNVLADLGMLEEALSAYVVAIRQNDRYVEAYNNRATVLQRLGRRNEAAEAYAR 130
Score = 38.5 bits (88), Expect = 2e-06
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 2 PSIHDILTE-AVALHNGGQPERAAALYRDVLAVEPAEPHSLHLLGLQMRRSGCEAEGIAL 60
P D+L+ ALH + + AA L +P + G + G AE +
Sbjct: 985 PGTADVLSNLGGALHKLLRFDEAARLLDRATRCDPGLAVAWTNRGNALEAMGLIAEAESC 1044
Query: 61 MARSLLLAPTLAPALFNQARALQDSGRLDEAIAHFRRKLELDP 103
++ LAP+LA A N A L+ GR +EA+A F LE DP
Sbjct: 1045 HRTAIELAPSLADAHGNLAYLLKRHGRQEEALAAFDAALEADP 1087
Score = 36.2 bits (82), Expect = 1e-05
Identities = 61/229 (26%), Positives = 85/229 (37%), Gaps = 19/229 (8%)
Query: 22 RAAALYRDVLAVEPAEPHSLHLLGLQMRRSGCEAEGIALMARSLLLAPTLAPALFNQARA 81
+A +YR LA++ P +L GL ++R G E A R+L + A A N
Sbjct: 398 QAGRMYRRALAIDAGSPSALTGYGLVLQRLGRIGEAEAAHRRALEIDGRHAEAAGNLGMM 457
Query: 82 LQDSGRLDEAIAHFR-RKLELDPNCGVTSIALGSEALARGRLDEAERILRR--------- 131
L + D A + L ++P+ + G L+RG L RR
Sbjct: 458 LWQCHQDDTAAEPWMDLALSVNPSLNTAHLNRGMLRLSRGDLPGGWDGYRRRFWAKGYVN 517
Query: 132 ---AAVLEAGGAFASRLRRALERVATARGIARDAADPSLPPGLVVRGAFRDSSGYAHKVR 188
AA L G A RR L V +G+ + S P L+ R V
Sbjct: 518 RRIAAPLWQGENSAG--RRLL--VWREQGVGDEIMFASCYPSLIGRAGHVVIECDRRLVP 573
Query: 189 QFVRHLVDAGVRVRLVDLNHGDVDNLPDDQIDPLLHTLDRPVRAKAVLS 237
F R A VR VD + PD +D + D P R +A LS
Sbjct: 574 LFARSFPRATVRAESVDARGDETIQPPD--VDAHVPAGDLPGRLRASLS 620
Score = 35.0 bits (79), Expect = 3e-05
Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 4/125 (3%)
Query: 21 ERAAALYRDVLAVEPAEPHSL-HLLGLQ-MRRSGCEAEGIALMARSLLLAPTLAPALFNQ 78
ER A YR L + P +L +L G+ +RR AE L R+ + P N
Sbjct: 329 ERPARWYRRALRLRPDYGKALVNLAGIHILRRELHHAE--RLYRRAAVADPRSVETFVNL 386
Query: 79 ARALQDSGRLDEAIAHFRRKLELDPNCGVTSIALGSEALARGRLDEAERILRRAAVLEAG 138
L D L +A +RR L +D G GR+ EAE RRA ++
Sbjct: 387 GGLLLDRDDLSQAGRMYRRALAIDAGSPSALTGYGLVLQRLGRIGEAEAAHRRALEIDGR 446
Query: 139 GAFAS 143
A A+
Sbjct: 447 HAEAA 451
Score = 35.0 bits (79), Expect = 3e-05
Identities = 46/182 (25%), Positives = 68/182 (37%), Gaps = 28/182 (15%)
Query: 8 LTEAVALHNGGQPERAAALYRDVLAVEPAEPHSLHLLGLQMRRSGCEAEGIALMARSLLL 67
+ EAVA + G A ++ R +L PA +LHL G+ +R G E L+ R+
Sbjct: 825 MAEAVAHYRTGDFALAESVVRQLLDRVPAHSVALHLGGVLAKRRGSLEEAQDLLVRASAA 884
Query: 68 APTLAPALFNQARALQDSGRLDEAIAHFRRKLELDPNCGVTSIALGSEALARGRLDEAER 127
P A A Q G+++ A R + + P D A
Sbjct: 885 DPHNASAHAALCEVRQGLGQIEAADRASRACVAVQP-------------------DSAGH 925
Query: 128 ILRRAAVLEAGGAFASRLRRALERVATARGIARDAADPSLPPGLVVRGAFRDSSGYAHKV 187
+ R A+L G A+ R A+ R R P L P L D+ G A +V
Sbjct: 926 WVNRTALLRRTGQVAA-ARSAIIRALHLR--------PDLAPALGHLAELADTPGDAVRV 976
Query: 188 RQ 189
+
Sbjct: 977 HR 978
Score = 35.0 bits (79), Expect = 3e-05
Identities = 52/186 (27%), Positives = 70/186 (37%), Gaps = 39/186 (20%)
Query: 18 GQPERAAALYRDVLAVEP-AEPHSLHLLGLQMRRSGCEAEGIALMARSLLLAPTLAPALF 76
GQ E A R +AV+P + H ++ L +RR+G A + + R+L L P LAPAL
Sbjct: 903 GQIEAADRASRACVAVQPDSAGHWVNRTAL-LRRTGQVAAARSAIIRALHLRPDLAPALG 961
Query: 77 NQARALQDSG-------------------------------RLDEAIAHFRRKLELDPNC 105
+ A G R DEA R DP
Sbjct: 962 HLAELADTPGDAVRVHRIAVSLTPGTADVLSNLGGALHKLLRFDEAARLLDRATRCDPGL 1021
Query: 106 GVTSIALGSEALARGRLDEAERILRRA-----AVLEAGGAFASRLRR-ALERVATARGIA 159
V G+ A G + EAE R A ++ +A G A L+R + A A A
Sbjct: 1022 AVAWTNRGNALEAMGLIAEAESCHRTAIELAPSLADAHGNLAYLLKRHGRQEEALAAFDA 1081
Query: 160 RDAADP 165
ADP
Sbjct: 1082 ALEADP 1087
Score = 26.9 bits (58), Expect = 0.007
Identities = 24/68 (35%), Positives = 30/68 (44%)
Query: 75 LFNQARALQDSGRLDEAIAHFRRKLELDPNCGVTSIALGSEALARGRLDEAERILRRAAV 134
L + A L +GRL EA+A +RR L DP A GR EA L A
Sbjct: 6 LLDAALPLHRAGRLAEALALYRRILTDDPAHADALHLSAIIAHQTGRTAEALANLGAALA 65
Query: 135 LEAGGAFA 142
++ G A A
Sbjct: 66 VQPGFATA 73
Score = 26.9 bits (58), Expect = 0.007
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 48 MRRSGCEAEGIALMARSLLLAPTLAPALFNQARALQDSGRLDEAIAHFRRKLELDPNCGV 107
++R G E AR+L + P A FN ++ G++ A F ++ DP+
Sbjct: 115 LQRLGRRNEAAEAYARALTMGPDNLTARFNYGVLQRELGQISPAANAFYAVVQADPS--- 171
Query: 108 TSIALGSEALARGRL--DEAERILRRA 132
S A A+ L +AE LRRA
Sbjct: 172 HSAAWRHLAICLRNLGHPDAEACLRRA 198