Pairwise Alignments

Query, 370 a.a., Sensor kinase CckA from Azospirillum sp. SherDot2

Subject, 697 a.a., PAS domain-containing sensor histidine kinase from Pseudomonas sp. SVBP6

 Score =  226 bits (576), Expect = 1e-63
 Identities = 136/320 (42%), Positives = 186/320 (58%), Gaps = 11/320 (3%)

Query: 57  AQLTHSLLAFARRQMLTPKPAHMLPLIAGMRPLLERTLGGLIRFDIDVPPGTAPVMVDPA 116
           A L H LLAF+RRQ L P+   +  L++GM  L+ R++G  I  ++     T    +D +
Sbjct: 379 ASLVHRLLAFSRRQTLEPRTIDVNRLVSGMTELIRRSVGPHIEIELFTASATCRASIDSS 438

Query: 117 QLESAILNLAINARDAMPQGGVLTLRADNIAIRRQGEPGCPAELAPGDYVAISLTDTGIG 176
           QLE+A+LNL INARDAMP GG +T+   ++  +   +     +L PGDY+A+S++D G G
Sbjct: 439 QLENALLNLCINARDAMPGGGRITIETRHL--QADDQIAAHLDLPPGDYLALSVSDNGRG 496

Query: 177 MEEATLARAFEPFFTTKGVGGGSGPGLSMVYGMVAQSGGGVTIASKVGKGTSVTIFIPRA 236
           M    LARAF+PFFTTK VG G+G GLSMVYG V QSGG V + S+ G+GTSV +++PR 
Sbjct: 497 MSPQVLARAFDPFFTTKPVGQGTGLGLSMVYGFVRQSGGQVRVYSEPGQGTSVHLYLPRL 556

Query: 237 SEARALTQEP-PSETIPGD--GAVVLLVDDDLLVRAGAAAVLKMLGYQVIAATSGLEALK 293
             A     EP P    P       V+LVDD+  +R     VL  LGY  I    G  AL 
Sbjct: 557 DSASLPASEPLPVARTPRGLRDMTVMLVDDEATIRMLVGEVLSDLGYTKIEFGDGHSALA 616

Query: 294 VLQERMPVDVMITDYAMP-GMSGVALIQETRRLAPSLPVLLITGYTDRP---EGI--ERC 347
            LQ    +D++I+D  MP GM+G  L+   R+L P L VL ITGY ++     G+     
Sbjct: 617 ALQNGAAIDLLISDVGMPGGMNGQQLVAAARQLRPGLKVLFITGYAEQAVLGGGVFEPTT 676

Query: 348 AVLHKPFKPQALAEQIATLL 367
            VL KPF    LA++I  ++
Sbjct: 677 RVLSKPFSLDTLAQRIEEMI 696