Pairwise Alignments

Query, 930 a.a., Sensor histidine kinase RcsC from Azospirillum sp. SherDot2

Subject, 1258 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  223 bits (567), Expect = 8e-62
 Identities = 175/591 (29%), Positives = 274/591 (46%), Gaps = 83/591 (14%)

Query: 338  TALNHARDMAESARQAAEAANRAKGEFLAGLSHELRTPLNAVIGFADLIAREAEGPVGTP 397
            T    A  +   A   AEAA++AK +FLA +SHE+RTP+NA+IG + L  +        P
Sbjct: 590  TERKRADALLHQALDRAEAASQAKADFLANMSHEIRTPMNAIIGMSHLALKTEL----NP 645

Query: 398  SYRQYAANVRDSGQHVLELINEILDHARAEAGALTIEEGHCDLEAAADFAVRMLTPRAER 457
              R Y   ++ SGQH+L +IN+ILD ++ EAG L++E+    L+   D    +++ +   
Sbjct: 646  RQRDYVRKIQQSGQHLLGIINDILDFSKIEAGKLSVEKTAVHLDTVLDNVANLISEKTIA 705

Query: 458  AGV-LLSAVVAPAVGALRGDDRRIRQILLNLIANGVKYTPSGGSVTLSALLEDGTPVIR- 515
             G+ L+  V +     + GD  R+ QIL+N   N VK+T +G  V    L ED    +R 
Sbjct: 706  KGLELIFDVASDVPNDMVGDPLRLGQILINYANNAVKFTETGEIVVAVRLAEDLGEAVRL 765

Query: 516  ---ITDTGLGIPAEDLDRVLEPFARVESADHRGVEGAGLGLPLTKRLVELHGGTLALRST 572
               + DTG+G+ AE + R+ + F + +++  R   G GLGL ++++L EL  G + + S 
Sbjct: 766  RFEVRDTGIGLSAEQMGRLFQSFQQADTSTTRKYGGTGLGLAISRKLAELMDGEVGVESQ 825

Query: 573  LGVGTTVTVRLPANRLLPAEALGMPATPPARPAPATNSAASSAASPSIAPSLTVPAQPLA 632
             G G+T        +  P  AL                                      
Sbjct: 826  PGRGSTFWFTACLGKGRPRRAL-------------------------------------- 847

Query: 633  QPLAPALSPPPSGPLSILLVDDDPTVRDMVAGLLRGWGHRVIAATNANEALV---VLDGP 689
                  +  P      +L+VDD+   R ++  +L     RV A  +   A+     + G 
Sbjct: 848  ------VPKPDLRGRHMLVVDDNENARAVLVDMLTSMSFRVEAVESGAAAVARVREVAGA 901

Query: 690  EKLDLLLSDVVMPPGMDGTELARHTARMRPGLPVLLASGFAA--HAVGTPAGFGPNVAMI 747
            +  +++  D  M PGMDG E AR           +L  G  +  H +   A     V   
Sbjct: 902  KPFEVVFLDWQM-PGMDGIETAR----------AILGLGLTSPPHMIMVTAHGREEVMKA 950

Query: 748  AKPFSIEDLRRQ------LARIAGRRVGAAPQAQAMAAQAIAAPPPAQPPAPPTPRPAGP 801
            A+   IED+  +      +     R +GAA +     A   AA       A  + R    
Sbjct: 951  AESAGIEDVLIKPVNPSIMFDAVMRALGAALEGDPEEA---AAGREVSDDALASLRGL-- 1005

Query: 802  PRLLIAEDLSINRELLAALFKDSGYRIDLVADGAAAVEAVKAGDYDLVLMDVQMPEMDGL 861
             R+L+AED   N+++   L  D G  +++  +G  AV+ V A  YD+VLMD+QMP MDG+
Sbjct: 1006 -RVLLAEDNDFNQQVATELLADGGVEVEVAENGKIAVDMVMAAPYDMVLMDMQMPVMDGV 1064

Query: 862  EASRIIRAMPPPRGDLPILALTAGSSDEERRDCRDAGMNGHIGKPYERDLL 912
             A+R IR +    GDLP++A+TA +   +R  C  AGMN ++ KP + D L
Sbjct: 1065 AATREIRRL--GFGDLPVIAMTANAMQADRDRCAAAGMNDYLTKPIDPDEL 1113



 Score = 57.8 bits (138), Expect = 4e-12
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 13/176 (7%)

Query: 756 LRRQLARIAGRRVGAAPQ-AQAMAAQAIAAPPPAQPPAPPTPRPAGPPR-LLIAEDLSIN 813
           + R+LA +    VG   Q  +       A     +P     P+P    R +L+ +D    
Sbjct: 808 ISRKLAELMDGEVGVESQPGRGSTFWFTACLGKGRPRRALVPKPDLRGRHMLVVDDNENA 867

Query: 814 RELLAALFKDSGYRIDLVADGAAAVEAVK----AGDYDLVLMDVQMPEMDGLEASRIIRA 869
           R +L  +     +R++ V  GAAAV  V+    A  +++V +D QMP MDG+E +R I  
Sbjct: 868 RAVLVDMLTSMSFRVEAVESGAAAVARVREVAGAKPFEVVFLDWQMPGMDGIETARAILG 927

Query: 870 M---PPPRGDLPILALTAGSSDEERRDCRDAGMNGHIGKPYERDLLLRQIARTLAA 922
           +    PP     ++ +TA   +E  +    AG+   + KP    ++   + R L A
Sbjct: 928 LGLTSPPH----MIMVTAHGREEVMKAAESAGIEDVLIKPVNPSIMFDAVMRALGA 979