Pairwise Alignments

Query, 221 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 181 a.a., putative RNA polymerase sigma-70 factor from Agrobacterium fabrum C58

 Score = 77.4 bits (189), Expect = 2e-19
 Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 7/176 (3%)

Query: 45  LSADLVAVAAGDRQAFARLFAHFAPRVKAYMLKLGMPAQRAEDLAQDTMLSVWRKAQLYD 104
           L   L A A GDR A   +F   A R+ A   ++    + AE++ Q++ + +W  A  Y 
Sbjct: 8   LDRALAACARGDRNALRVIFEREAGRLIAVAERIVKRRELAEEVVQESFVRIWTHAPQYR 67

Query: 105 PAKAEAATWVFTIARNLRIDALR-RERHPEVSDDELL---EHEDDRPPADELLDGDRRAR 160
                A  W++ I RN  ++ LR   R   V D E L   E  D+   A + LD   R  
Sbjct: 68  ADHGSARGWIYAIVRNRALNLLRDGSRELTVQDVETLRDSEQADEVVAAWQKLD---RNS 124

Query: 161 RLRGALAALTPEQAEVVRLSFFADLAHPAIAERLDVPLGTVKSRLRLAMAKIRKAL 216
           RL   L AL   + + + +++ A  +H  IA RL VPLGT KS +R  ++ +R+ +
Sbjct: 125 RLYECLGALDETKRQGILMAYVAGYSHGEIAGRLRVPLGTTKSWIRRGLSALRECM 180