Pairwise Alignments

Query, 293 a.a., RNA polymerase sigma factor RpoH from Azospirillum sp. SherDot2

Subject, 284 a.a., RNA polymerase sigma factor RpoH from Pseudomonas fluorescens GW456-L13

 Score =  194 bits (493), Expect = 2e-54
 Identities = 111/270 (41%), Positives = 160/270 (59%), Gaps = 7/270 (2%)

Query: 13  GESLSRYINDTHRYPVLTAEDEYMLAKAWTEHGDVDAAHRLVTSHLRLVVKIAGGYRGYG 72
           G +L  Y++  +  P+L+ E E  LA++     D+ AA ++V +HLR VV IA  Y GYG
Sbjct: 14  GANLEAYVHTVNSIPLLSPEQERELAESLYYEQDLGAARQMVLAHLRFVVHIARSYSGYG 73

Query: 73  LPLSDLIAEGNLGLMTAVKKFEPERGFRLSTYAMWWIKASIQDYILRSWSLVKIGTTAAQ 132
           L  +DLI EGN+GLM AVK+F PE G RL ++A+ WIKA I ++ILR+W +VK+ TT AQ
Sbjct: 74  LAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKVATTKAQ 133

Query: 133 KKLFFSLGRLKRKLGEYGSGDLHPDSVTSIATDLSVPEDDVVAMNRRMSGPVASLNAPMS 192
           +KLFF+L   K++L    + ++H      +A  L V   +V  M  R++G   + +    
Sbjct: 134 RKLFFNLRSQKKRLAWLNNEEVH-----RVAESLGVEPREVREMESRLTGHDMAFDPAAE 188

Query: 193 ADGDSG--EWQDLLADERPSVEESLVERGEARQRSALLHEAMAVLNDRERDILTSRRLSD 250
           AD DS      + L D R      L +   +   +  LHEA+ VL+DR RDIL  R L++
Sbjct: 189 ADDDSAFQSPANYLEDHRYDPARQLEDADWSDNSNHNLHEALEVLDDRSRDILYQRWLAE 248

Query: 251 SPLTLEDLSVRYGVSRERIRQIEEKAFEKV 280
              TL DL+ +Y VS ERIRQ+E+ A  K+
Sbjct: 249 EKATLHDLAQKYNVSAERIRQLEKSAMNKL 278